PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00042151001

Common Name

GSBRNA2T00042151001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

bHLH

Protein Properties

Length: 347aa MW: 38813.7 Da PI: 5.9483

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00042151001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	24	6.8e-08	199	245	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-.STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskK.lsKaeiLekAveYIksLq 55 h+ +Er RR++i +++ L++++P + kK a +L + ++Y++sLq GSBRNA2T00042151001 199 HSLAERARREKISKKMKYLQDIVPGC-----KKvTGQAGMLDEIINYVQSLQ 245 999*********************.....77799*************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	3.66E-15	191	262	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	4.14E-7	192	249	No hit	No description
PROSITE profile	PS50888	13.91	194	244	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.4E-15	195	263	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.5E-5	199	245	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	6.4E-7	200	250	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 347 aa Download sequence Send to blast
MLEGLVSPEN LSLSSMDMNV LERLKWLQQQ QQQQVVSQSS DNSPELLQIL QFHESNNDEL 60 LQSTFSHFQM LGSGFGPSPN MGFGPSHEAM DGCISRTSSF QMVPVDTMGV MLKNSEENRT 120 ISSKNKRKSE VKRREEEKTE KKIKVEAETE SNMKGKSSMS NNTEASSDTS KETSKGASEI 180 QKLDYIHVRS RRGQATDRHS LAERARREKI SKKMKYLQDI VPGCKKVTGQ AGMLDEIINY 240 VQSLQTQVEF LSMKLAVLNS ELELAVEDLY VKQDQTLHAY FTNLPVVNAS KPSIMVDVPL 300 FPLDQQGSLD LSVINLSQTT SIEAPSASWE TQSRSLFNTS SLGFHY*

Sequence ? help Back to Top

Protein Sequence Length: 347 aa Download sequence Send to blast

MLEGLVSPEN LSLSSMDMNV LERLKWLQQQ QQQQVVSQSS DNSPELLQIL QFHESNNDEL  60
LQSTFSHFQM LGSGFGPSPN MGFGPSHEAM DGCISRTSSF QMVPVDTMGV MLKNSEENRT  120
ISSKNKRKSE VKRREEEKTE KKIKVEAETE SNMKGKSSMS NNTEASSDTS KETSKGASEI  180
QKLDYIHVRS RRGQATDRHS LAERARREKI SKKMKYLQDI VPGCKKVTGQ AGMLDEIINY  240
VQSLQTQVEF LSMKLAVLNS ELELAVEDLY VKQDQTLHAY FTNLPVVNAS KPSIMVDVPL  300
FPLDQQGSLD LSVINLSQTT SIEAPSASWE TQSRSLFNTS SLGFHY*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bna.4566	1e-161	flower\| leaf\| seed\| vegetative meristem

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Highly expressed in hypocotyls and cotyledons. Expressed in leaves, stems, and flowers. {ECO:0000269\|PubMed:12679534, ECO:0000269\|PubMed:23221598}.

Functional Description ? help Back to Top
Source	Description
UniProt	Atypical bHLH transcription factor that acts as positive regulator of cell elongation downstream of multiple external and endogenous signals by direct binding to the promoters and activation of the two expansin genes EXPA1 and EXPA8, encoding cell wall loosening enzymes. Transcriptional activity is inhibited when binding to the bHLH transcription factor IBH1. {ECO:0000269\|PubMed:23221598}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00042151001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK353391	0.0	AK353391.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-36-E14.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013680215.1	0.0	transcription factor HBI1-like
Swissprot	Q9ZPW3	0.0	HBI1_ARATH; Transcription factor HBI1
TrEMBL	A0A078GRW3	0.0	A0A078GRW3_BRANA; BnaA06g25320D protein
STRING	Bo3g094060.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3406	23	63

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G18300.2	1e-159	bHLH family protein

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]