PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp3g31710
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family bHLH
Protein Properties Length: 339aa    MW: 37763.7 Da    PI: 6.0773
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp3g31710genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.55.8e-09195241555
                HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++Y++sLq
  Tp3g31710 195 HSLAERARREKISKKMKYLQDLVPGC----NKVTGKAGMLDEIINYVQSLQ 241
                999**********************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.50E-8188245No hitNo description
SuperFamilySSF474598.9E-17188258IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.939190240IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.5E-17191259IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.4E-6195241IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.9E-9196246IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009299Biological ProcessmRNA transcription
GO:0009735Biological Processresponse to cytokinin
GO:0009826Biological Processunidimensional cell growth
GO:0043425Molecular FunctionbHLH transcription factor binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MLEGLVSTDS LSVSSMDMSV LERLKWLQQQ QVVSQSSNDS PELLQILQFH GSNNDLLLQS  60
TLSHFQMLGS GIGPNYNMGF GPSHEAMDGC ISRTSSCQMD PADTMGVILK NSEENRAISL  120
KNKRKSEVKT REEEKTEKKI KVEAETESNM KGKSNVSNIE ASSDTSKETS KGASETQKLD  180
YIHVRARRGQ ATDRHSLAER ARREKISKKM KYLQDLVPGC NKVTGKAGML DEIINYVQSL  240
QRQVEFLSMK LAVLNPELEL AVEDLSVKQF QAYFTNLPVV VASKPSIKVD VPLFPLDQQG  300
SLDLSVINPN RTTCIEAPSA SWETQSQSLY NTSSLEFQY
Functional Description ? help Back to Top
Source Description
UniProtAtypical bHLH transcription factor that acts as positive regulator of cell elongation downstream of multiple external and endogenous signals by direct binding to the promoters and activation of the two expansin genes EXPA1 and EXPA8, encoding cell wall loosening enzymes. Transcriptional activity is inhibited when binding to the bHLH transcription factor IBH1. {ECO:0000269|PubMed:23221598}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00106PBMTransfer from AT2G18300Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp3g31710
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3533910.0AK353391.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-36-E14.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013680215.10.0transcription factor HBI1-like
SwissprotQ9ZPW30.0HBI1_ARATH; Transcription factor HBI1
TrEMBLA0A1J3HJB10.0A0A1J3HJB1_NOCCA; Transcription factor HBI1
STRINGBo3g094060.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM34062363
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G18300.21e-171bHLH family protein