PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RrC3431_p3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | bHLH | ||||||||
Protein Properties | Length: 314aa MW: 35416.1 Da PI: 6.1813 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 29.8 | 1.1e-09 | 175 | 221 | 5 | 55 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h+ +Er RR++i +++ L++l+P + ++ Ka +L + ++Y++sLq RrC3431_p3 175 HSLAERARREKISKKMKYLQDLVPGC----NTITGKAGVLDEIINYVQSLQ 221 999***********************....9*******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 1.98E-8 | 168 | 225 | No hit | No description |
SuperFamily | SSF47459 | 3.14E-16 | 168 | 238 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 14.862 | 170 | 220 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 7.7E-17 | 171 | 239 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.4E-7 | 175 | 221 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.2E-8 | 176 | 226 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 314 aa Download sequence Send to blast |
MSVPERLKWM QQHQQIEVLS QSSNDSPELL QILQFHGSNN DELLQSTFSH FQMLESGFGT 60 KYNMDFCPSH EVMDGCISRT SSCQIDPADT MGVMLKNSVE SRAIFLKNKR KSEVKTREEE 120 KTEKKIKVEA ETESNINNKE ASSDTSKETS KGASEIQKLD YIHVRARRGQ ATDRHSLAER 180 ARREKISKKM KYLQDLVPGC NTITGKAGVL DEIINYVQSL QRQVEFLSMK LAVLNPELEL 240 AVEDLSVNQF QAYLTNFPVV IASKPSVMVD LQLFPLDQQG SLDLSVINPN QTSINAPSAS 300 WETQSHSLFA SVLR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Atypical bHLH transcription factor that acts as positive regulator of cell elongation downstream of multiple external and endogenous signals by direct binding to the promoters and activation of the two expansin genes EXPA1 and EXPA8, encoding cell wall loosening enzymes. Transcriptional activity is inhibited when binding to the bHLH transcription factor IBH1. {ECO:0000269|PubMed:23221598}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK353391 | 0.0 | AK353391.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-36-E14. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018453383.1 | 0.0 | PREDICTED: transcription factor HBI1-like isoform X3 | ||||
Refseq | XP_018457346.1 | 0.0 | PREDICTED: transcription factor HBI1-like isoform X3 | ||||
Swissprot | Q9ZPW3 | 1e-168 | HBI1_ARATH; Transcription factor HBI1 | ||||
TrEMBL | A0A078GYI0 | 0.0 | A0A078GYI0_BRANA; BnaA09g09600D protein | ||||
STRING | Bra037226.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3406 | 23 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G18300.2 | 1e-150 | bHLH family protein |