PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010548320.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family bHLH
Protein Properties Length: 371aa    MW: 41509.7 Da    PI: 6.7183
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010548320.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.61e-08207254455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +h+ +Er RR++i +++  L++l+P +    sk   Ka +L + ++Y++sLq
  XP_010548320.1 207 KHSLAERARREKISKKMKFLQDLVPGC----SKVTGKAGMLDEIINYVQSLQ 254
                     699***********************9....556*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.93E-16201269IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.95E-10201258No hitNo description
Gene3DG3DSA:4.10.280.101.3E-16203270IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.072203253IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.1E-6207254IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.8E-9209259IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 371 aa     Download sequence    Send to blast
MLGDLVSPES SSLSSMGMSV LERFEWLQQQ VVSQDSNSNK YSTSPELVQM LQFHAPDGGE  60
LRRAEDCLGN NDELQSFRHF PMAGTVFGSN YNVGFVPEHD AAIDGCISRT SSCQMEPLDT  120
AVVVLNKKEE TRGTSLNKRK SEVKPREENT DKKIKMEAET ESSMKGKSST SNTEAYSDTS  180
KETSKVSEIQ KPDFIHVRAR RGQATDKHSL AERARREKIS KKMKFLQDLV PGCSKVTGKA  240
GMLDEIINYV QSLQRQVEFL SMKLAVLNPD LEFDVDDITG KQVTSLKSRF TIKESSGNCR  300
FVFESFYEEK KWFQGYFTGL LLPPTRSKPS VMAGLASFPL HHQGSLDFPN QTPSLNAAIS  360
QDTSTFGFHY C
Functional Description ? help Back to Top
Source Description
UniProtAtypical bHLH transcription factor that acts as positive regulator of cell elongation downstream of multiple external and endogenous signals by direct binding to the promoters and activation of the two expansin genes EXPA1 and EXPA8, encoding cell wall loosening enzymes. Transcriptional activity is inhibited when binding to the bHLH transcription factor IBH1. {ECO:0000269|PubMed:23221598}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010548320.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010548320.10.0PREDICTED: transcription factor HBI1-like isoform X1
SwissprotQ9ZPW31e-124HBI1_ARATH; Transcription factor HBI1
TrEMBLA0A1J3DV331e-124A0A1J3DV33_NOCCA; Transcription factor HBI1
STRINGXP_010548320.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM34062363
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G18300.21e-116bHLH family protein