PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RrC1524_p3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | bHLH | ||||||||
Protein Properties | Length: 299aa MW: 34304.6 Da PI: 6.6324 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 24.8 | 4e-08 | 147 | 193 | 5 | 55 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h+ +Er RR+++ +++ L++++P + +k Ka +L + ++Y++sLq RrC1524_p3 147 HSLAERARREKLSKKMKCLQDIVPGC----NKVTGKAGMLDEIINYVQSLQ 193 999**********************9....677*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 4.06E-7 | 140 | 197 | No hit | No description |
SuperFamily | SSF47459 | 2.22E-16 | 140 | 212 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 14.462 | 142 | 192 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 9.0E-17 | 144 | 211 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 9.5E-6 | 147 | 193 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 8.2E-10 | 148 | 198 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006351 | Biological Process | transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 299 aa Download sequence Send to blast |
MDLSVLERVN WLQQQQMVSP DFFEILGSDG REELKRVESY LGNNNDEVQG FRHYETIDGC 60 ISRTSSFQME QVKNHEENIV IALQPKRKTE GKTEKIENKK KKIKTEDETE SSMKGKSNMS 120 NSETSSEIQK RDYIHVRARR GEATDRHSLA ERARREKLSK KMKCLQDIVP GCNKVTGKAG 180 MLDEIINYVQ SLQQQVEFLS MKLSVLNPEL EFHINELSTK QFQACFTDLS EAVPKQPMMV 240 DASSFPLQQH GSLDYSLINS NQTTILSSKD QTSSSWEIHS QCLYNNLRTD SVSSFFSLK |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 85 | 101 | KRKTEGKTEKIENKKKK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Positive regulator of brassinosteroid signaling. {ECO:0000269|PubMed:12454087}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by flagellin, jasmonic acid (JA), brassinosteroid and cytokinin, and repressed by abscisic acid. Insensitive to gibberellic acid. {ECO:0000269|PubMed:12454087, ECO:0000269|PubMed:12679534}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK352723 | 0.0 | AK352723.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-02-A24. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018451014.1 | 0.0 | PREDICTED: transcription factor BEE 2 isoform X2 | ||||
Swissprot | Q93VJ4 | 1e-172 | BEE2_ARATH; Transcription factor BEE 2 | ||||
TrEMBL | M4D258 | 0.0 | M4D258_BRARP; Uncharacterized protein | ||||
STRING | Bra010558.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3406 | 23 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36540.1 | 1e-148 | BR enhanced expression 2 |
Publications ? help Back to Top | |||
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