PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp7g34190
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family bHLH
Protein Properties Length: 304aa    MW: 34912.2 Da    PI: 6.3816
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp7g34190genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.61.1e-08152198555
                HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                h+ +Er RR++i +++  L++++P +    sk   Ka +L + ++Y++sLq
  Tp7g34190 152 HSLAERARREKISKKMKCLQDIVPGC----SKVTGKAGMLDEIINYVQSLQ 198
                999**********************9....556*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.93E-16145216IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.14E-7145202No hitNo description
PROSITE profilePS5088814.64147197IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-16149215IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.3E-6152198IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.1E-10153203IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MDLSVLERLK WQQQQQMISP EFLQILGSDG REELKRVESY LGNNNDELQS FRHFPEFGLD  60
YDTIDGCISR TSSFQMEPVK NNEENRAIAL QNKRKLEGKT ETREKKKIKA EDETESSMKG  120
KSNMSNTETS SEIQKPDYIH VRARRGEATD RHSLAERARR EKISKKMKCL QDIVPGCSKV  180
TGKAGMLDEI INYVQSLQQQ VEFLSMKLSV VNPELEFHIN ELSTKQFQAY FTDLPEAVSK  240
QSIMADLRSF PLHQQGSLDY SVINSNQTTS LGAKDQTSQS WEIQSQCLYN NLRTDSVSNF  300
FSLK
Functional Description ? help Back to Top
Source Description
UniProtPositive regulator of brassinosteroid signaling. {ECO:0000269|PubMed:12454087}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp7g34190
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by flagellin, jasmonic acid (JA), brassinosteroid and cytokinin, and repressed by abscisic acid. Insensitive to gibberellic acid. {ECO:0000269|PubMed:12454087, ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3527230.0AK352723.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-02-A24.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019089805.10.0PREDICTED: transcription factor BEE 2 isoform X1
SwissprotQ93VJ40.0BEE2_ARATH; Transcription factor BEE 2
TrEMBLA0A1J3G2B20.0A0A1J3G2B2_NOCCA; Transcription factor BEE 2
STRINGXP_010446781.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM34062363
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36540.10.0BR enhanced expression 2
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Singh M,Gupta A,Singh D,Khurana JP,Laxmi A
    Arabidopsis RSS1 Mediates Cross-Talk Between Glucose and Light Signaling During Hypocotyl Elongation Growth.
    Sci Rep, 2017. 7(1): p. 16101
    [PMID:29170398]