PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rsa1.0_00327.1_g00010.1

Organism

Raphanus sativus

Taxonomic ID

3726

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

bHLH

Protein Properties

Length: 270aa MW: 30916.9 Da PI: 8.5965

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rsa1.0_00327.1_g00010.1	genome	RGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	28.5	2.8e-09	137	183	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h+ +Er RR++i ++++ L++++P + +k Ka +L + ++Y++sLq Rsa1.0_00327.1_g00010.1 137 HSLAERARREKISKKMQCLQDIVPGC----NKVTGKAGMLDEIINYVQSLQ 183 999********************9....677***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	1.96E-7	130	187	No hit	No description
SuperFamily	SSF47459	8.9E-17	130	202	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	14.507	132	182	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.0E-17	134	201	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	7.3E-7	137	183	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	3.7E-10	138	188	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 270 aa Download sequence Send to blast
MDLTGLKWLQ QQQRMVSPEF LQILASDGRE ELRRVESYLG NNIYDTIDGC ISRTSSFQME 60 PVKNNEENRA VALLNKRKSE GKTETREKKK KKIKAEDETE SSIKGKSNMS NTETSSDIQK 120 QDYIHVRARR GEATDRHSLA ERARREKISK KMQCLQDIVP GCNKVTGKAG MLDEIINYVQ 180 SLQQQVEFLS MKLSVLNPQL EFHINELSMM ADLRSFPLHQ QGSLDYSVMN SNQTTSLVAK 240 NDTSSSWDIH SQCPYNNLRT DPVSNFFSLK

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	75	91	KRKSEGKTETREKKKKK

Functional Description ? help Back to Top
Source	Description
UniProt	Positive regulator of brassinosteroid signaling. {ECO:0000269\|PubMed:12454087}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Rsa1.0_00327.1_g00010.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by flagellin, jasmonic acid (JA), brassinosteroid and cytokinin, and repressed by abscisic acid. Insensitive to gibberellic acid. {ECO:0000269\|PubMed:12454087, ECO:0000269\|PubMed:12679534}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK352723	0.0	AK352723.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-02-A24.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018477855.1	0.0	PREDICTED: transcription factor BEE 2-like
Swissprot	Q93VJ4	1e-156	BEE2_ARATH; Transcription factor BEE 2
TrEMBL	A0A078I0S8	1e-162	A0A078I0S8_BRANA; BnaA03g53460D protein
STRING	Bo7g118000.1	1e-158	(Brassica oleracea)
STRING	XP_010432168.1	1e-158	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3406	23	63

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36540.2	1e-140	BR enhanced expression 2

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Singh M,Gupta A,Singh D,Khurana JP,Laxmi A Arabidopsis RSS1 Mediates Cross-Talk Between Glucose and Light Signaling During Hypocotyl Elongation Growth. Sci Rep, 2017. 7(1): p. 16101 [PMID:29170398]