PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009102251.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 337aa    MW: 37760.7 Da    PI: 6.0755
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009102251.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH23.78.5e-08193239555
                     HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     h+ +Er RR++i +++  L++l+P +    +k    a +L + ++Y++sLq
  XP_009102251.1 193 HSLAERARREKISKKMKYLQDLVPGC----NKVTGRAGMLDEIINYVQSLQ 239
                     999**********************9....66799***************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474595.63E-16186256IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.18E-7186243No hitNo description
PROSITE profilePS5088814.335188238IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.8E-16189257IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.8E-5193239IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.0E-8194244IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MLESLVSLES MSLSSMDVSV LERLKWLQQQ QQQVLSTTNA SPELLQFHGT NNDELLQNTF  60
SHFQMLGSGF GPNYSMGFGP SHEAMDGCIS RTNSCQMDQA DTVGVMLKNS EENITISLKN  120
KRKSEVKTRE EEKTEKKIKV EAETELNMKV KSNLSNTEAS SETSKQKSKA ASENQKLDYI  180
HVRARRGQAT DRHSLAERAR REKISKKMKY LQDLVPGCNK VTGRAGMLDE IINYVQSLQR  240
QVEFLSMKLA VLNPELELAM EDLSVKQFQA YFTNLPVVVA SKPSLMVDAP LFPLDQQGSL  300
DLSVINPNQA TTIEAPSASW ETQSQSLYNT SSLGFQY
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Highly expressed in hypocotyls and cotyledons. Expressed in leaves, stems, and flowers. {ECO:0000269|PubMed:12679534, ECO:0000269|PubMed:23221598}.
Functional Description ? help Back to Top
Source Description
UniProtAtypical bHLH transcription factor that acts as positive regulator of cell elongation downstream of multiple external and endogenous signals by direct binding to the promoters and activation of the two expansin genes EXPA1 and EXPA8, encoding cell wall loosening enzymes. Transcriptional activity is inhibited when binding to the bHLH transcription factor IBH1. {ECO:0000269|PubMed:23221598}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009102251.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3533910.0AK353391.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-36-E14.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009102251.10.0PREDICTED: transcription factor HBI1-like
SwissprotQ9ZPW30.0HBI1_ARATH; Transcription factor HBI1
TrEMBLA0A397YH070.0A0A397YH07_BRACM; Uncharacterized protein
TrEMBLM4FEU60.0M4FEU6_BRARP; Uncharacterized protein
STRINGBra039618.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM34062363
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G18300.21e-160bHLH family protein