PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC2220_p2
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 339aa    MW: 37993 Da    PI: 6.6868
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC2220_p2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH23.78.6e-08195241555
                 HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 h+ +Er RR++i +++  L++l+P +    +k    a +L + ++Y++sLq
  RrC2220_p2 195 HSLAERARREKISKKMKYLQDLVPGC----NKVTGRAGMLDEIINYVQSLQ 241
                 999**********************9....66799***************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474595.76E-16188258IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.70E-7188245No hitNo description
PROSITE profilePS5088814.335190240IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.9E-16191259IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.8E-5195241IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.0E-8196246IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009299Biological ProcessmRNA transcription
GO:0009735Biological Processresponse to cytokinin
GO:0009826Biological Processunidimensional cell growth
GO:0043425Molecular FunctionbHLH transcription factor binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MLESLVSLES MSLSSMDVSV LERLKWLQQQ QQQQQVLSST NASPELLQFH GTNNDELLQN  60
TFSHFQMLRS GFGPNYSMGF GPSHEPMDGC ISRTNSCQMD QADTVGVMLK NSEENIAFSL  120
KSKRKSEVKT RAEEKTEKKI KVEAETESKM KVKSNLSNTE ASSETSKQTS KGASEIQKLD  180
YIHVRARRGQ ATDRHSLAER ARREKISKKM KYLQDLVPGC NKVTGRAGML DEIINYVQSL  240
QRQVEFLSMK LAVLNPELEL AMEDLSVKQF QAYFTNLPVL VASKPSLMVD APLFPLDQQG  300
SLDLSVINPN QATSIEAPSA SWETQSQSLY NTSSLGFQY
Functional Description ? help Back to Top
Source Description
UniProtAtypical bHLH transcription factor that acts as positive regulator of cell elongation downstream of multiple external and endogenous signals by direct binding to the promoters and activation of the two expansin genes EXPA1 and EXPA8, encoding cell wall loosening enzymes. Transcriptional activity is inhibited when binding to the bHLH transcription factor IBH1. {ECO:0000269|PubMed:23221598}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00106PBMTransfer from AT2G18300Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3533910.0AK353391.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-36-E14.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018434343.10.0PREDICTED: transcription factor HBI1
SwissprotQ9ZPW30.0HBI1_ARATH; Transcription factor HBI1
TrEMBLA0A078GJ030.0A0A078GJ03_BRANA; BnaA07g02010D protein
STRINGBo7g011300.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM34062363
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G18300.21e-179bHLH family protein