PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa01g041450.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family bHLH
Protein Properties Length: 345aa    MW: 38717.7 Da    PI: 6.4109
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa01g041450.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH25.42.6e-08202248555
                     HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     h+ +Er RR++i +++  L++++P +    +k   Ka +L + ++Y++ Lq
  Csa01g041450.1 202 HSLAERARREKISKKMKYLQDIVPGC----NKVTGKAGMLDEIINYVQCLQ 248
                     999**********************9....677***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.97E-16195263IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.71E-6195252No hitNo description
PROSITE profilePS5088814.284197247IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.4E-16198265IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.3E-6202248IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.4E-8203253IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009299Biological ProcessmRNA transcription
GO:0009735Biological Processresponse to cytokinin
GO:0009826Biological Processunidimensional cell growth
GO:0043425Molecular FunctionbHLH transcription factor binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MLEGLVSQES LSLNSMDMSV LERLKWVQQQ QQQLQQVVSQ SSNNSPELLH QILQFHGSNN  60
DELLQGSFSQ FQMIGSGFGP NYNMGYGPQH EAMDGCISRT SSCQMEPVDT MEVLLKNGTK  120
EDRPISLKNK RKQEVKTREE ENTEKKIKVE ADTESSMKGK SNMRNREASS ETSKETLKGV  180
SEIPKLDYIH VRARRGQATD RHSLAERARR EKISKKMKYL QDIVPGCNKV TGKAGMLDEI  240
INYVQCLQRQ VEFLSMKLAV LNPDLELAVE DVSVKQFQAY FTNVVGSSKH SIMVDVPLFP  300
LDHQGSLDLS AINPNQTTSI EAPSASWESQ SQSLYNTSSL GFQY*
Functional Description ? help Back to Top
Source Description
UniProtAtypical bHLH transcription factor that acts as positive regulator of cell elongation downstream of multiple external and endogenous signals by direct binding to the promoters and activation of the two expansin genes EXPA1 and EXPA8, encoding cell wall loosening enzymes. Transcriptional activity is inhibited when binding to the bHLH transcription factor IBH1. {ECO:0000269|PubMed:23221598}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00106PBMTransfer from AT2G18300Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa01g041450.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4120990.0AF412099.1 Arabidopsis thaliana At2g18300/T30D6.19 mRNA, complete cds.
GenBankAY0780300.0AY078030.1 Arabidopsis thaliana At2g18300/T30D6.19 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010414188.10.0PREDICTED: transcription factor HBI1 isoform X1
SwissprotQ9ZPW30.0HBI1_ARATH; Transcription factor HBI1
TrEMBLA0A178VRT20.0A0A178VRT2_ARATH; HBI1
STRINGXP_010414188.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM34062363
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G18300.20.0bHLH family protein