PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00002971001 | ||||||||
Common Name | GSBRNA2T00002971001, LOC106357812 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | bHLH | ||||||||
Protein Properties | Length: 333aa MW: 37098.7 Da PI: 5.8939 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 27.1 | 7.5e-09 | 192 | 238 | 5 | 55 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h+ +Er RR++i +++ L++l+P + ++ Ka +L + ++Y++sLq GSBRNA2T00002971001 192 HSLAERARREKISKKMKYLQDLVPGC----NTVTGKAGVLDEIINYVQSLQ 238 999***********************....999*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 6.94E-16 | 185 | 254 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.55E-8 | 185 | 242 | No hit | No description |
PROSITE profile | PS50888 | 14.723 | 187 | 237 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.4E-16 | 189 | 254 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.1E-6 | 192 | 238 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 4.7E-9 | 193 | 243 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 333 aa Download sequence Send to blast |
MLEGLVSPEN LSLSYADMSV PERLKWLQQH QQQEVLSLSS NDSPDLLQIL QFHGSNNDEL 60 LQSTFSHFQM VGSGFGTNYN MGFGHSHEAM DGCISRTSSC QIHPPDTMGV MLKNSEENRA 120 ISLKNKRKSE VKTREEEKTE KKIKVEAETE SNISNKEASS DTSKETSKGA SQIQKLDYIH 180 VRARRGEATD RHSLAERARR EKISKKMKYL QDLVPGCNTV TGKAGVLDEI INYVQSLQRQ 240 VEFLSMKLAV INPELELGVE DLSVKQFQAA YFTNFPVVIA SKPSVMVDVP LFLLDQQGSP 300 NLSVSNPNQT SIDAPSESWE TQSQSLFASV LR* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Bna.4566 | 0.0 | flower| leaf| seed| vegetative meristem |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Highly expressed in hypocotyls and cotyledons. Expressed in leaves, stems, and flowers. {ECO:0000269|PubMed:12679534, ECO:0000269|PubMed:23221598}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Atypical bHLH transcription factor that acts as positive regulator of cell elongation downstream of multiple external and endogenous signals by direct binding to the promoters and activation of the two expansin genes EXPA1 and EXPA8, encoding cell wall loosening enzymes. Transcriptional activity is inhibited when binding to the bHLH transcription factor IBH1. {ECO:0000269|PubMed:23221598}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00002971001 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC232550 | 0.0 | AC232550.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH011J16, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013606719.1 | 0.0 | PREDICTED: transcription factor HBI1-like | ||||
Refseq | XP_013652967.1 | 0.0 | transcription factor HBI1 | ||||
Swissprot | Q9ZPW3 | 1e-173 | HBI1_ARATH; Transcription factor HBI1 | ||||
TrEMBL | A0A078IMK1 | 0.0 | A0A078IMK1_BRANA; BnaC09g09710D protein | ||||
TrEMBL | A0A0D3E3B2 | 0.0 | A0A0D3E3B2_BRAOL; Uncharacterized protein | ||||
STRING | Bo9g026090.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3406 | 23 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G18300.2 | 1e-148 | bHLH family protein |
Link Out ? help Back to Top | |
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Entrez Gene | 106357812 |
Publications ? help Back to Top | |||
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