PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676721078
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family bHLH
Protein Properties Length: 290aa    MW: 33152.2 Da    PI: 6.6326
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676721078genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.61.1e-08136182555
                HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                h+ +Er RR++i +++  L++++P +    +k   Ka +L + ++Y++sLq
  676721078 136 HSLAERARREKISKKMKCLQDIVPGC----NKVTGKAGMLDEIINYVQSLQ 182
                999**********************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000833.38E-7129186No hitNo description
SuperFamilySSF474591.13E-16129201IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.634131181IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.5E-17133200IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.5E-6136182IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.6E-10137187IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MVSPEFLQML GSDGREELKR VESYLGNNND ELQSFRHFPE FGADYETIDG CISRTNSFQM  60
ETVKNNEETK TVALQNKRKP EGKTEKKERK KIKAEDETES SMKEKSNMSN IETSSEIQKP  120
DYIHVRARRG EATDRHSLAE RARREKISKK MKCLQDIVPG CNKVTGKAGM LDEIINYVQS  180
LQQQVEFLSM KLSVLNPELE FHINELSTKQ LQACFTDFPE AASKHSMMAD LRSFPLHQQG  240
SLDYSVINSN QTTSLGAIKD QTSSSWEIHS QCIYNNLRTD SVSNFFSLKN
Functional Description ? help Back to Top
Source Description
UniProtPositive regulator of brassinosteroid signaling. {ECO:0000269|PubMed:12454087}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap676721078
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by flagellin, jasmonic acid (JA), brassinosteroid and cytokinin, and repressed by abscisic acid. Insensitive to gibberellic acid. {ECO:0000269|PubMed:12454087, ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3527230.0AK352723.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-02-A24.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019089805.10.0PREDICTED: transcription factor BEE 2 isoform X1
SwissprotQ93VJ40.0BEE2_ARATH; Transcription factor BEE 2
TrEMBLA0A1J3G2B20.0A0A1J3G2B2_NOCCA; Transcription factor BEE 2
STRINGXP_010446781.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM34062363
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36540.11e-171BR enhanced expression 2
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Singh M,Gupta A,Singh D,Khurana JP,Laxmi A
    Arabidopsis RSS1 Mediates Cross-Talk Between Glucose and Light Signaling During Hypocotyl Elongation Growth.
    Sci Rep, 2017. 7(1): p. 16101
    [PMID:29170398]