PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Carubv10014138m | ||||||||
Common Name | CARUB_v10014138mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | bHLH | ||||||||
Protein Properties | Length: 336aa MW: 37672.7 Da PI: 6.1174 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 25.4 | 2.5e-08 | 193 | 239 | 5 | 55 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h+ +Er RR++i +++ L++++P + +k Ka +L + ++Y++ Lq Carubv10014138m 193 HSLAERARREKISKKMKYLQDIVPGC----NKVTGKAGMLDEIINYVQCLQ 239 999**********************9....677***************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 2.36E-16 | 186 | 256 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 6.17E-7 | 186 | 243 | No hit | No description |
PROSITE profile | PS50888 | 14.284 | 188 | 238 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.2E-16 | 189 | 257 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 5.1E-6 | 193 | 239 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 3.4E-8 | 194 | 244 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009299 | Biological Process | mRNA transcription | ||||
GO:0009735 | Biological Process | response to cytokinin | ||||
GO:0009826 | Biological Process | unidimensional cell growth | ||||
GO:0043425 | Molecular Function | bHLH transcription factor binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 336 aa Download sequence Send to blast |
MLEGLVCQES LDMSVLERLK WLQQQQHQLQ HVVSQSSNNS PELLQQILQL HGSNNDELLQ 60 GGFSQFQMIG SGFGPNYNMG YVPSHEAMDG CISRTSSCQM DPVDAMDVLL KNGEEDKPIS 120 LKNKRKAEVK TREEEKTEKK IKVEAETESS MKGKPNMRNT EASSKETLKE VSEIPKLDYI 180 HVRARRGQAT DRHSLAERAR REKISKKMKY LQDIVPGCNK VTGKAGMLDE IINYVQCLQR 240 QVEFLSMKLA VLNPELELAM EDASVKQFQA YFTNVVGSSK HSIMVDVPLF PLDQQGSLDL 300 SAINPNQATS IEAPSASWET QSQSHYNTSS LGFQY* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Atypical bHLH transcription factor that acts as positive regulator of cell elongation downstream of multiple external and endogenous signals by direct binding to the promoters and activation of the two expansin genes EXPA1 and EXPA8, encoding cell wall loosening enzymes. Transcriptional activity is inhibited when binding to the bHLH transcription factor IBH1. {ECO:0000269|PubMed:23221598}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00106 | PBM | Transfer from AT2G18300 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Carubv10014138m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF412099 | 0.0 | AF412099.1 Arabidopsis thaliana At2g18300/T30D6.19 mRNA, complete cds. | |||
GenBank | AY078030 | 0.0 | AY078030.1 Arabidopsis thaliana At2g18300/T30D6.19 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006298096.1 | 0.0 | transcription factor HBI1 isoform X1 | ||||
Swissprot | Q9ZPW3 | 0.0 | HBI1_ARATH; Transcription factor HBI1 | ||||
TrEMBL | R0HMR7 | 0.0 | R0HMR7_9BRAS; Uncharacterized protein | ||||
STRING | XP_006298096.1 | 0.0 | (Capsella rubella) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3406 | 23 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G18300.2 | 1e-173 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Carubv10014138m |
Entrez Gene | 17892113 |