PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10005334m
Common NameCARUB_v10005334mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family bHLH
Protein Properties Length: 305aa    MW: 34729 Da    PI: 7.5365
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10005334mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.51.2e-08152198555
                      HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      h+ +Er RR++i +++  L++++P +    +k   Ka +L + ++Y++sLq
  Carubv10005334m 152 HSLAERARREKISKKMKCLQDIVPGC----NKVTGKAGMLDEIINYVQSLQ 198
                      999**********************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.4E-16145215IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.05E-7145202No hitNo description
PROSITE profilePS5088814.634147197IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.7E-17149215IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.7E-6152198IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.6E-10153203IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MDLSVLDRLK WLQQQQLVSP EFLQIISSDG REELNRVESY LGNNNDELQS FRHFPEFGPD  60
YDTIDGCISR TSSFRMEPVK NNGDNRAIAL QNKRKPQGKT EKREKKKIKS EDETESSMKA  120
KSHMSNTETS SEIQKPDYIH VRARRGEATD RHSLAERARR EKISKKMKCL QDIVPGCNKV  180
TGKAGMLDEI INYVQSLQQQ VEFLSMKLSV VNPELECHID ELSAKQFQAY FTGLPEAVSK  240
QSMMADFRSF PLHQQGSLDY SVINANQITS LSAKDQTSSS WEAHSQCLYN SFRTDSVSNL  300
FSLK*
Functional Description ? help Back to Top
Source Description
UniProtPositive regulator of brassinosteroid signaling. {ECO:0000269|PubMed:12454087}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10005334m
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by flagellin, jasmonic acid (JA), brassinosteroid and cytokinin, and repressed by abscisic acid. Insensitive to gibberellic acid. {ECO:0000269|PubMed:12454087, ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF3702310.0AF370231.1 Arabidopsis thaliana unknown protein (At4g36540) mRNA, complete cds.
GenBankAY0591220.0AY059122.1 Arabidopsis thaliana unknown protein (At4g36540) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006284188.10.0transcription factor BEE 2 isoform X1
SwissprotQ93VJ40.0BEE2_ARATH; Transcription factor BEE 2
TrEMBLR0F6F90.0R0F6F9_9BRAS; Uncharacterized protein
STRINGXP_006284188.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM34062363
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36540.10.0BR enhanced expression 2
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Singh M,Gupta A,Singh D,Khurana JP,Laxmi A
    Arabidopsis RSS1 Mediates Cross-Talk Between Glucose and Light Signaling During Hypocotyl Elongation Growth.
    Sci Rep, 2017. 7(1): p. 16101
    [PMID:29170398]