PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00083691001 | ||||||||
Common Name | GSBRNA2T00029080001, GSBRNA2T00083691001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | bHLH | ||||||||
Protein Properties | Length: 338aa MW: 37820.8 Da PI: 6.3809 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 23.7 | 8.5e-08 | 193 | 239 | 5 | 55 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h+ +Er RR++i +++ L++l+P + +k a +L + ++Y++sLq GSBRNA2T00083691001 193 HSLAERARREKISKKMKYLQDLVPGC----NKVTGRAGMLDEIINYVQSLQ 239 999**********************9....66799***************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 5.63E-16 | 186 | 256 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.51E-7 | 186 | 243 | No hit | No description |
PROSITE profile | PS50888 | 14.335 | 188 | 238 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.8E-16 | 189 | 257 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.8E-5 | 193 | 239 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.0E-8 | 194 | 244 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 338 aa Download sequence Send to blast |
MLESLVSLES MSLSSMDVSV LERLKWLQQQ QQQVLSTTNA SPELLQFHGT NNDELLQNTF 60 SHFQMLRSGF GPNYSMGFGP SHEAMDGCIS RTNSCQMDQA DTVGVMLKNS EENITISLKN 120 KRKSEVKTRE EEKTEKKIKV EAETESNMKV KSNLSNTEAS SETSKQKSKA ASETQKLDYI 180 HVRARRGQAT DRHSLAERAR REKISKKMKY LQDLVPGCNK VTGRAGMLDE IINYVQSLQR 240 QVEFLSMKLA VLNPELELAM EDLSVKQFQA YFTNLPVVVA SKPSLMVDAP LFPLDQQGSL 300 DLSVINPNQA TTIEAPSASW ETQSQSLYNT SSLGFQY* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Bna.23847 | 0.0 | leaf| seed| vegetative meristem |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Highly expressed in hypocotyls and cotyledons. Expressed in leaves, stems, and flowers. {ECO:0000269|PubMed:12679534, ECO:0000269|PubMed:23221598}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Atypical bHLH transcription factor that acts as positive regulator of cell elongation downstream of multiple external and endogenous signals by direct binding to the promoters and activation of the two expansin genes EXPA1 and EXPA8, encoding cell wall loosening enzymes. Transcriptional activity is inhibited when binding to the bHLH transcription factor IBH1. {ECO:0000269|PubMed:23221598}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00083691001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK353391 | 0.0 | AK353391.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-36-E14. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013729041.1 | 0.0 | transcription factor HBI1-like | ||||
Swissprot | Q9ZPW3 | 0.0 | HBI1_ARATH; Transcription factor HBI1 | ||||
TrEMBL | A0A078GJ03 | 0.0 | A0A078GJ03_BRANA; BnaA07g02010D protein | ||||
STRING | Bra039618.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3406 | 23 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G18300.2 | 1e-159 | bHLH family protein |
Publications ? help Back to Top | |||
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