PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 480739
Common NameARALYDRAFT_480739
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family bHLH
Protein Properties Length: 338aa    MW: 37871.7 Da    PI: 6.5268
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
480739genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH25.42.5e-08196242555
             HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
     HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
             h+ +Er RR++i +++  L++++P +    +k   Ka +L + ++Y++ Lq
  480739 196 HSLAERARREKISKKMKYLQDIVPGC----NKVTGKAGMLDEIINYVQCLQ 242
             999**********************9....677***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.49E-16189259IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.83E-6189246No hitNo description
PROSITE profilePS5088814.284191241IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.2E-16192260IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.1E-6196242IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.4E-8197247IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009299Biological ProcessmRNA transcription
GO:0009735Biological Processresponse to cytokinin
GO:0009826Biological Processunidimensional cell growth
GO:0043425Molecular FunctionbHLH transcription factor binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MLEGLVSQES LSLNSMDMSV LERLKWVQQQ QQQLQQVVYQ SSNNSHELLQ ILQFHGSNND  60
DLLQSSFSPF QMLGSGFGPN YNIGFGPPHE AISRTSSCHM EPVDTIEVLL KTGEENRAIA  120
LKNKRNPEVK TRGEEKTEKK IKVEAETESS MKGKSNMRNT EASSDTSKET SKKASEIQKL  180
DYIHVRARRG QATDRHSLAE RARREKISKK MKYLQDIVPG CNKVTGKAGM LDEIINYVQC  240
LQRQVEFLSM KLAVLNPELE LAVEDVSVKQ FQAYFTNVVA SKQSIMVDVP LFPLDQQGSL  300
DLSAINPNQT TSIEAPSASW ETQSQSLYNT SSLGFQY*
Functional Description ? help Back to Top
Source Description
UniProtAtypical bHLH transcription factor that acts as positive regulator of cell elongation downstream of multiple external and endogenous signals by direct binding to the promoters and activation of the two expansin genes EXPA1 and EXPA8, encoding cell wall loosening enzymes. Transcriptional activity is inhibited when binding to the bHLH transcription factor IBH1. {ECO:0000269|PubMed:23221598}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00106PBMTransfer from AT2G18300Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap480739
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4120990.0AF412099.1 Arabidopsis thaliana At2g18300/T30D6.19 mRNA, complete cds.
GenBankAY0780300.0AY078030.1 Arabidopsis thaliana At2g18300/T30D6.19 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020888574.10.0transcription factor HBI1 isoform X1
SwissprotQ9ZPW30.0HBI1_ARATH; Transcription factor HBI1
TrEMBLD7LBA70.0D7LBA7_ARALL; Basic helix-loop-helix family protein
STRINGfgenesh2_kg.3__3440__AT2G18300.20.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM34062363
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G18300.20.0bHLH family protein