PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK40214.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family bHLH
Protein Properties Length: 332aa    MW: 37126 Da    PI: 5.7641
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK40214.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.72.3e-09188234555
                 HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++Y++sLq
  KFK40214.1 188 HSLAERARREKISKKYKYLQDLVPGC----NKVTGKAGMLDEIINYVQSLQ 234
                 999**********************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.57E-16181251IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.59E-9181238No hitNo description
PROSITE profilePS5088814.9183233IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.9E-16184250IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.3E-7188234IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.4E-9189239IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009299Biological ProcessmRNA transcription
GO:0009735Biological Processresponse to cytokinin
GO:0009826Biological Processunidimensional cell growth
GO:0043425Molecular FunctionbHLH transcription factor binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MLEGLVSAES SMDMSVLERL KWLQHQQLVS QSSNNSPELL QILQFHGTNN DELLQSTFSN  60
FQMLGSGFGP NYNIGFGPPH EAMDGCISRT SSCQMEPVDA MGALLKNSEE NTLKNKRKSE  120
VKTREEEKTE KKIKVEAETE SNMKGKGNLS NTEASSYTSK ETSKGVSENQ KLDYIHVRAR  180
RGQATDRHSL AERARREKIS KKYKYLQDLV PGCNKVTGKA GMLDEIINYV QSLQRQVEFL  240
SMKLAVINPE LELAMEDLSV KQFQAYFTNL PVVVASKPSI MIDVPLFPLD QQGSLDLSVI  300
NPNQSISIEA PSASWETQSQ SLYNTPSLGF QF
Functional Description ? help Back to Top
Source Description
UniProtAtypical bHLH transcription factor that acts as positive regulator of cell elongation downstream of multiple external and endogenous signals by direct binding to the promoters and activation of the two expansin genes EXPA1 and EXPA8, encoding cell wall loosening enzymes. Transcriptional activity is inhibited when binding to the bHLH transcription factor IBH1. {ECO:0000269|PubMed:23221598}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00106PBMTransfer from AT2G18300Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK40214.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3533910.0AK353391.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-36-E14.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013680215.10.0transcription factor HBI1-like
SwissprotQ9ZPW30.0HBI1_ARATH; Transcription factor HBI1
TrEMBLA0A087HDL20.0A0A087HDL2_ARAAL; Uncharacterized protein
STRINGA0A087HDL20.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM34062363
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G18300.21e-180bHLH family protein