PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa12g004930.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | bHLH | ||||||||
Protein Properties | Length: 244aa MW: 28060.9 Da PI: 8.0935 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 27 | 8.3e-09 | 152 | 198 | 5 | 55 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h+ +Er RR++i +++ L++++P + +k Ka +L + ++Y++sLq Csa12g004930.1 152 HSLAERARREKISKKMKCLQDIVPGC----NKVTGKAGMLDEIINYVQSLQ 198 999**********************9....677*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 2.49E-16 | 145 | 215 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 8.47E-7 | 145 | 202 | No hit | No description |
PROSITE profile | PS50888 | 14.634 | 147 | 197 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 3.5E-17 | 149 | 216 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.9E-6 | 152 | 198 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 3.6E-10 | 153 | 203 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 244 aa Download sequence Send to blast |
MDLSVLDRLK WLQQQQLVSP EFLHIIGSDG REELKRVETY LGNNNDELQS FRHFPEFGPD 60 YDTIDGCISR TSSFHMEPVK NNEDNRAIAL QNKRKPEGKT EKREKKKIKA EDETESSMKG 120 KSNMSNTETS SEIQKPDYIH VRARRGEATD RHSLAERARR EKISKKMKCL QDIVPGCNKV 180 TGKAGMLDEI INYVQSLQQQ VEFLSMKLSV INPELESHID ELSAKQVIKL SFIPRINLVF 240 HIY* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Positive regulator of brassinosteroid signaling. {ECO:0000269|PubMed:12454087}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa12g004930.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by flagellin, jasmonic acid (JA), brassinosteroid and cytokinin, and repressed by abscisic acid. Insensitive to gibberellic acid. {ECO:0000269|PubMed:12454087, ECO:0000269|PubMed:12679534}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF370231 | 0.0 | AF370231.1 Arabidopsis thaliana unknown protein (At4g36540) mRNA, complete cds. | |||
GenBank | AY054588 | 0.0 | AY054588.1 Arabidopsis thaliana Unknown protein mRNA, complete cds. | |||
GenBank | AY059122 | 0.0 | AY059122.1 Arabidopsis thaliana unknown protein (At4g36540) mRNA, complete cds. | |||
GenBank | BT000388 | 0.0 | BT000388.1 Arabidopsis thaliana Unknown protein (At4g36540) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019089806.1 | 1e-168 | PREDICTED: transcription factor BEE 2 isoform X2 | ||||
Swissprot | Q93VJ4 | 1e-159 | BEE2_ARATH; Transcription factor BEE 2 | ||||
TrEMBL | R0F6F9 | 1e-157 | R0F6F9_9BRAS; Uncharacterized protein | ||||
STRING | XP_010446781.1 | 1e-167 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3406 | 23 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36540.2 | 1e-143 | BR enhanced expression 2 |
Publications ? help Back to Top | |||
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