PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Phylogenetic Tree for OGEM1855
Phylogenetic tree for protein ? help Back to Top |
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Subtree rooted at node 139: /----- orange1.1g024344m [Citrus sinensis] (3) /-100+ | \----- Ciclev10032412m [Citrus clementina] (13) /------100------+ | | /----- Neem_12129_f_1 [Azadirachta indica] (22) | \-100+ | \----- Neem_6557_f_3 [Azadirachta indica] (52) | | /----- Gorai.005G188700.1 [Gossypium raimondii] (24) | /-99-+ | | \----- Gh_D02G1714 [Gossypium hirsutum] (60) | /-100+ /-----------100-----------+ | | /----- Cotton_A_19301_BGI-A2_v1.0 [Gossypium arboreum] (29) | | | \-57-+ | | | \----- Gh_A03G1273 [Gossypium hirsutum] (51) | | /-100-+ | | | | /----- Gorai.008G053100.1 [Gossypium raimondii] (28) | | | | /-98-+ | | | | | \----- Gh_D12G0475 [Gossypium hirsutum] (62) | | | \-100+ | \-100+ | /----- Cotton_A_21315_BGI-A2_v1.0 [Gossypium arboreum] (32) | | \-100+ | | \----- Gh_A12G2534 [Gossypium hirsutum] (58) | | | \--------------------- evm.model.supercontig_5.303 [Carica papaya] (68) | | /----- XP_010553649.1 [Tarenaya hassleriana] (4) /-51-+ /-------------------100------------------+ | | | \----- XP_010548267.1 [Tarenaya hassleriana] (56) | | | | | | /------------------------------- KFK43332.1 [Arabis alpina] (7) | | | | | | | | /----- Rsa1.0_00605.1_g00002.1 [Raphanus sativus] (21) | | | | /-100+ | | | | | \----- RrC241_p8 [Raphanus raphanistrum] (53) | | | | /-66-+ | | | | | | /----- GSBRNA2T00156091001 [Brassica napus] (38) | | | /-98-+ | \-100+ | | | | | /-100-+ \----- XP_009148369.1 [Brassica rapa] (66) | | | | | | | | | | | | | | /----- XP_013585673.1 [Brassica oleracea] (40) | | | | | /-92-+ \----98---+ | \-100-+ | | | | \----- GSBRNA2T00065023001 [Brassica napus] (59) | | /-100+ | | | | | | | \-73-+ \--------------------- Tp1g09050 [Thellungiella parvula] (77) | | | | | | | | | \-------------------------- 676723328 [Sisymbrium irio] (34) | | | | | | | \------------------------------------ Thhalv10008474m [Eutrema salsugineum] (72) | | | | | | /----- Carubv10020803m [Capsella rubella] (14) | | | /---100---+ /-100+ | | | \----- Cagra.4331s0005.1.p [Capsella grandiflora] (23) | | | | | | | | | /-100-+ /----- Csa07g017420.1 [Camelina sativa] (47) | | | | | | /-89-+ | | | | | | | \----- Csa16g017820.1 [Camelina sativa] (55) | | \-85-+ | \-100+ | | | /-57-+ \---------- Csa12g044460.1 [Camelina sativa] (50) | | | | | | | | | | /----- 893615 [Arabidopsis lyrata] (20) | | | /-100+ \------100------+ | | | | | \----- AT1G59640.2 [Arabidopsis thaliana] (57) | | | | | | | | | \-------------------------- Bostr.10040s0284.1.p [Boechera stricta] (69) | | | /-100+ | | | | | /----- 676778830 [Sisymbrium irio] (27) | | | | | /-100+ | | | | | | \----- Tp2g04920 [Thellungiella parvula] (61) | | | | \---------100--------+ | | \-100+ | /----- Thhalv10023982m [Eutrema salsugineum] (35) --100+ | | \-91-+ | | | \----- Thhalv10023643m [Eutrema salsugineum] (46) | | | | | \------------------------------------ AA53G00440 [Aethionema arabicum] (65) | | | | /----- Eucgr.B03392.1.p [Eucalyptus grandis] (17) | \------------------------100------------------------+ | \----- EcC034723.20 [Eucalyptus camaldulensis] (18) | | /----- Eucgr.K02908.1.p [Eucalyptus grandis] (5) | /---------88---------+ | | \----- Eucgr.B00385.1.p [Eucalyptus grandis] (16) | | | | /----- Thecc1EG045748t1 [Theobroma cacao] (6) | | /---100---+ | | | \----- Thecc1EG045701t1 [Theobroma cacao] (25) | | | | | /-100-+ /----- Gh_A11G2978 [Gossypium hirsutum] (48) \----------------100----------------+ | | /-93-+ | | | | \----- Cotton_A_09193_BGI-A2_v1.0 [Gossypium arboreum] (76) | | \-100+ | | | /----- Gorai.007G034400.1 [Gossypium raimondii] (63) | | \-100+ | | \----- Gh_D11G0306 [Gossypium hirsutum] (78) | | \-93-+ /----- Neem_19110_f_1 [Azadirachta indica] (8) | /-100+ | | \----- Neem_39244_f_1 [Azadirachta indica] (49) |----100---+ | | /----- orange1.1g023847m [Citrus sinensis] (10) | \-100+ | \----- Ciclev10021606m [Citrus clementina] (33) | \--------------------- evm.model.supercontig_203.5 [Carica papaya] (30) Root part of tree: /------------------------------------------------------------------- Carubv10017822m [Capsella rubella] (1) | |------------------------------------------------------------------- Cagra.13768s0007.1.p [Capsella grandiflora] (36) | | /----------------- Tp2g25790 [Thellungiella parvula] (2) | | | | /------ XP_013608995.1 [Brassica oleracea] (41) | /----99----+ | | | | /-89-+------ GSBRNA2T00094642001 [Brassica napus] (67) | | | | | | | \-100-+ \------ XP_009112028.1 [Brassica rapa] (74) | | | | | \----------- GSBRNA2T00146197001 [Brassica napus] (43) | | | | /------ KFK27990.1 [Arabis alpina] (9) | /-57-+ | | | | |------ 496441 [Arabidopsis lyrata] (54) | | | /-------99------+ | | | | |------ Araha.4414s0003.1.p [Arabidopsis halleri] (70) | | | | | | | | | \------ AT5G62610.1 [Arabidopsis thaliana] (75) | | | | | | \--97-+ /------ Carubv10026916m [Capsella rubella] (37) + /--97-+ | /-100+ | | | | | \------ Cagra.4003s0049.1.p [Capsella grandiflora] (71) | | | | /--97-+ | | | | | \----------- Bostr.0568s0546.1.p [Boechera stricta] (39) | | | \-98-+ | /-100-+ | \----------------- Csa11g099450.1 [Camelina sativa] (42) | | | | | | | \--------------------------------- Thhalv10004734m [Eutrema salsugineum] (73) | | | | | \--------------------------------------- AA5G00056 [Aethionema arabicum] (19) | /-100+ | | | /------ (139) | | | /-97-+ | | | | \------ XP_010547798.1 [Tarenaya hassleriana] (64) | /--98-+ \---------------100---------------+ | | | \----------- XP_010546046.1 [Tarenaya hassleriana] (44) | | | | | | /------ Araha.2719s0004.1.p [Arabidopsis halleri] (12) | /-99-+ \--------------------100--------------------+ | | | \------ 347878 [Arabidopsis lyrata] (26) | | | | | \-------------------------------------------------------- Bostr.18473s0167.1.p [Boechera stricta] (45) \-100-+ | /----------- Csa06g021460.1 [Camelina sativa] (11) | | \-----------------------100-----------------------+ /------ Csa09g048300.1 [Camelina sativa] (15) \-100+ \------ Csa04g030770.1 [Camelina sativa] (31) |