PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK27990.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family bHLH
Protein Properties Length: 284aa    MW: 31101.4 Da    PI: 5.7478
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK27990.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.43.9e-11167213555
                 HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 h+ +Er RR++i +++  L++++P +    +k   Ka +L + ++YI+sLq
  KFK27990.1 167 HSLAERARREKISEKMTALQDIIPGC----NKIIGKALVLDEIINYIQSLQ 213
                 999***********************....999*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474596.15E-17160227IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.72E-10160217No hitNo description
PROSITE profilePS5088815.18162212IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.8E-17163229IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.4E-8167213IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.9E-10168218IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
MDPPLVNDSS FSAANPSSYT LSEIWPFPVN DAVRSGLRLA VDSGRVFTRS ELVEHSGNKD  60
VVSTAEESTV TDLTAGWGRR KTRDLNSEDD SSKMVSSSSS GNELKESGDK KRKICGSESG  120
NGDGSMRPEG ETSSGGGSKA NEQKNKPEPQ KDYIHVRARR GQATDRHSLA ERARREKISE  180
KMTALQDIIP GCNKIIGKAL VLDEIINYIQ SLQRQVEFLS MKLEVVNSSA STGPSIGVYP  240
SGDLGSLPID VHRTIYEQQE ANETRVSQPD WLHMQVDGNF NRTT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1103112LKESGDKKRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK27990.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0721040.0AY072104.1 Arabidopsis thaliana unknown protein (At5g62610) mRNA, complete cds.
GenBankAY0845780.0AY084578.1 Arabidopsis thaliana clone 112281 mRNA, complete sequence.
GenBankAY1230230.0AY123023.1 Arabidopsis thaliana unknown protein (At5g62610) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006394373.10.0transcription factor bHLH79
SwissprotQ9LV170.0BH079_ARATH; Transcription factor bHLH79
TrEMBLA0A087GDN80.0A0A087GDN8_ARAAL; Uncharacterized protein
STRINGA0A087GDN80.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM18552878
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62610.10.0bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]