PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa16g017820.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family bHLH
Protein Properties Length: 279aa    MW: 30532.1 Da    PI: 5.7992
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa16g017820.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.29.4e-11160207455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++YI+sLq
  Csa16g017820.1 160 SHSLAERARREKISERMKILQDLVPGC----NKVIGKALVLDEIINYIQSLQ 207
                     8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.37E-10154211No hitNo description
SuperFamilySSF474596.41E-18154225IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.5E-18156224IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.828156206IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.0E-8160207IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.0E-10162212IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048446Biological Processpetal morphogenesis
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
MCFCFDSYSL MDPSGMMNEG GPFNLAEIWQ FPLNGVSTAG DSSRRSFAAG TNQFGESDLT  60
AAANGDPARM SHALSQAVIE GISGAWKRRE DESKSAKIVV SANGASEGEN KRQKKIDEVS  120
EGKGEAGSPG GTETEQKKQQ IEPSKDYIHV RARRGQATDS HSLAERARRE KISERMKILQ  180
DLVPGCNKVI GKALVLDEII NYIQSLQRQV EFLSMKLEAV NSRMNPGIEA FPPKEFGQQA  240
FENPEMQFGS QSTREYSRGA SPEWLHMQIG SGGFERTS*
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the control of petal size, by interfering with postmitotic cell expansion to limit final petal cell size. {ECO:0000269|PubMed:16902407}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00207DAPTransfer from AT1G59640Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa16g017820.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Isoform 1 is up-regulated by PI/AP3, SEP2, SEP3 and AP1, but repressed by AG. {ECO:0000269|PubMed:16902407}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM2697530.0AM269753.1 Arabidopsis thaliana mRNA for basic helix loop helix protein (bpe gene), BPE normal splice form.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010470217.10.0PREDICTED: transcription factor BPE-like
SwissprotQ0JXE71e-143BPE_ARATH; Transcription factor BPE
TrEMBLR0GIP90.0R0GIP9_9BRAS; Uncharacterized protein
STRINGXP_010470217.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM18552878
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G59640.11e-180BIG PETAL P
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]