PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 347878 | ||||||||
Common Name | ARALYDRAFT_347878 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | bHLH | ||||||||
Protein Properties | Length: 261aa MW: 29224.8 Da PI: 5.2794 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 32.2 | 1.9e-10 | 151 | 197 | 5 | 55 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h+ +Er RR++i +++ L++l+P + +k Ka +L + ++YI+sLq 347878 151 HSLAERARREKISERMKFLQDLIPGC----NKIIGKALVLDEIINYIQSLQ 197 999***********************....999*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 1.03E-9 | 144 | 201 | No hit | No description |
SuperFamily | SSF47459 | 6.8E-17 | 144 | 211 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.269 | 146 | 196 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 7.8E-17 | 147 | 213 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 7.4E-8 | 151 | 197 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.2E-8 | 152 | 202 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 261 aa Download sequence Send to blast |
MSDPEILNPV MVPPVVNEST FTEFWPFSVN YDVRLPLNSG QDFRYSGNSY ISGAEESTVT 60 EQTGGGRKRR ALTSQDESSK MMFSSCTSVN RLKESSKKKM KVCLSEGETE DGLRREGETS 120 SGGGSKETEE KSPLKDYIHV RARRGQATDR HSLAERARRE KISERMKFLQ DLIPGCNKII 180 GKALVLDEII NYIQSLQRQV EFLSMKLEIV NSDVSNGPKV GMFPSGDLNT LPIEVQRTMF 240 DQQEADESRG SQPDWLHMGD * |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 347878 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010515095.1 | 1e-146 | PREDICTED: transcription factor bHLH79 isoform X2 | ||||
Swissprot | Q9LV17 | 1e-100 | BH079_ARATH; Transcription factor bHLH79 | ||||
TrEMBL | D7LRG1 | 0.0 | D7LRG1_ARALL; Uncharacterized protein | ||||
STRING | fgenesh1_pg.C_scaffold_5001270 | 0.0 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1855 | 28 | 78 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G62610.1 | 1e-97 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | 347878 |
Entrez Gene | 9313645 |
Publications ? help Back to Top | |||
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