PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa12g044460.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family bHLH
Protein Properties Length: 269aa    MW: 29349.7 Da    PI: 6.1677
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa12g044460.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.38.9e-11150197455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++YI+sLq
  Csa12g044460.1 150 SHSLAERARREKISERMKILQDLVPGC----NKVIGKALVLDEIINYIQSLQ 197
                     8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000833.36E-10144201No hitNo description
SuperFamilySSF474595.89E-18144215IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.4E-18146214IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.828146196IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.8E-8150197IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.0E-10152202IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MDPSGMMNEG GPFNLAEIWQ FPLNGVSTAA DSSRRSFAAG TNQFGESDLT AAANGDPARM  60
SHALSQAVIE GISGAWKRRE DESKSAKIVV SANVASEGEN KRQKKIDEVS DGKGEAGSPG  120
GTETEQKKQQ IEPSKDYIHV RARRGQATDS HSLAERARRE KISERMKILQ DLVPGCNKVI  180
GKALVLDEII NYIQSLQRQV EFLSMKLEAV NSRMTPGIEA FPPKEFGQQA FENPDMQFGS  240
QSTREYSRGA SPEWLHMQIG SGGFERTS*
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the control of petal size, by interfering with postmitotic cell expansion to limit final petal cell size. {ECO:0000269|PubMed:16902407}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa12g044460.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Isoform 1 is up-regulated by PI/AP3, SEP2, SEP3 and AP1, but repressed by AG. {ECO:0000269|PubMed:16902407}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM2697530.0AM269753.1 Arabidopsis thaliana mRNA for basic helix loop helix protein (bpe gene), BPE normal splice form.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010449526.10.0PREDICTED: transcription factor BPE-like
SwissprotQ0JXE71e-142BPE_ARATH; Transcription factor BPE
TrEMBLR0GIP91e-179R0GIP9_9BRAS; Uncharacterized protein
STRINGXP_010449526.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM18552878
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G59640.11e-178BIG PETAL P
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]