PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

496441

Common Name

ARALYDRAFT_496441

Organism

Arabidopsis lyrata

Taxonomic ID

81972

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

bHLH

Protein Properties

Length: 283aa MW: 30596.8 Da PI: 6.0652

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
496441	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	34.4	3.9e-11	165	211	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h+ +Er RR++i +++ L++++P + +k Ka +L + ++YI+sLq 496441 165 HSLAERARREKISEKMTALQDIIPGC----NKIIGKALVLDEIINYIQSLQ 211 999*********************....999***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	5.77E-10	158	215	No hit	No description
SuperFamily	SSF47459	6.41E-17	158	225	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.18	160	210	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.5E-17	161	225	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.4E-8	165	211	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	9.9E-10	166	216	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 283 aa Download sequence Send to blast
MDPPLVNDSS FSAANPSSYT LSEIWPFPVN DAVRSGLRLA VNSGRVFTRS EHSGNKDVSA 60 AEESTVTDLT AGWGGRKTRD LNSEDDSSKM VSSSSSGNEL KESGDKKRKL CGSESGNGDG 120 SMRPEGETSS GGGGGSKATE QKNKPEPPKD YIHVRARRGQ ATDRHSLAER ARREKISEKM 180 TALQDIIPGC NKIIGKALVL DEIINYIQSL QRQVEFLSMK LEVVNSGAST GPTIGVFPSG 240 DLGTLPIDVH RTIYEQQEAN ETRVSQPEWL HMQVDGNFNR TT*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	99	108	LKESGDKKRK

Cis-element ? help Back to Top
Source	Link
PlantRegMap	496441

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY072104	0.0	AY072104.1 Arabidopsis thaliana unknown protein (At5g62610) mRNA, complete cds.
GenBank	AY084578	0.0	AY084578.1 Arabidopsis thaliana clone 112281 mRNA, complete sequence.
GenBank	AY123023	0.0	AY123023.1 Arabidopsis thaliana unknown protein (At5g62610) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020877892.1	0.0	transcription factor bHLH79
Swissprot	Q9LV17	0.0	BH079_ARATH; Transcription factor bHLH79
TrEMBL	D7MMC6	0.0	D7MMC6_ARALL; Basic helix-loop-helix family protein
STRING	fgenesh2_kg.8__2257__AT5G62610.1	0.0	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1855	28	78

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G62610.1	0.0	bHLH family protein

Link Out ? help Back to Top
Phytozome	496441
Entrez Gene	9302572

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]