PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_09193_BGI-A2_v1.0

Common Name

F383_14987

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bHLH

Protein Properties

Length: 285aa MW: 30619 Da PI: 5.735

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_09193_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	33.3	8.5e-11	166	213	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR+ri +++ L++l+P + +k Ka +L + ++YI+sLq Cotton_A_09193_BGI-A2_v1.0 166 SHSLAERARRERISERMKILQDLVPGC----NKVIGKALVLDEIINYIQSLQ 213 8***********************9....677***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	5.78E-11	160	217	No hit	No description
SuperFamily	SSF47459	4.45E-18	160	231	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	4.0E-18	162	231	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.815	162	212	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	3.5E-8	166	213	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	7.0E-11	168	218	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 285 aa Download sequence Send to blast
MDPPLINESS FSAANPSAYS LAEIWPFPIN PGSDPTAVTG GGLGLRIGNL GGFGETSGLR 60 DGSMEESTVT EQSVGCGGGR KRKELSSEDE SSKIVSTTTS ANELNDSNGK RMKTPVSKNG 120 NTGSKEAEVE ASSADGSKPD KNSKPAEPPK QDYIHVRARR GQATDSHSLA ERARRERISE 180 RMKILQDLVP GCNKVIGKAL VLDEIINYIQ SLQQQVEFLS MKLEAVNSRI NVNPSFEGFH 240 SKDLGLQPID GAGMIFGSQT AREYAQGSHP EWLQMHVGGN FERAA

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY779337	0.0	AY779337.1 Gossypium hirsutum bHLH transcription factor mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017616404.1	0.0	PREDICTED: transcription factor bHLH79
Swissprot	Q9LV17	1e-89	BH079_ARATH; Transcription factor bHLH79
TrEMBL	A0A0B0PXC3	0.0	A0A0B0PXC3_GOSAR; Transcription factor bHLH79-like protein
STRING	Gorai.007G034400.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1855	28	78

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G62610.1	4e-83	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]