PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Carubv10017822m

Common Name

CARUB_v10017822mg

Organism

Capsella rubella

Taxonomic ID

81985

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella

Family

bHLH

Protein Properties

Length: 274aa MW: 30306.9 Da PI: 5.2838

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Carubv10017822m	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	32.1	2.1e-10	156	202	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h+ +Er RR++i +++ L++l+P + +k Ka +L + ++YI+sLq Carubv10017822m 156 HSLAERARREKISERMKFLQDLIPGC----NKIIGKALVLDEIINYIQSLQ 202 999*********************....999***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	6.15E-17	149	216	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.71E-10	149	206	No hit	No description
PROSITE profile	PS50888	15.269	151	201	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	5.3E-17	152	219	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	8.0E-8	156	202	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.2E-8	157	207	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 274 aa Download sequence Send to blast
MSDPELLMDP PVVNESPFSE IWPFSVNYGI HLPLNPGQDF TSRGEVFGYS GNNYISAAEE 60 STVTELTGEG RKRRPLTSRD ESSKILSSCT SVTRLKDSSK KKKMKVCGSE GETEDGLRPE 120 GETSSGGGSK ATTEEKSPPK DYIHVRARRG QATDRHSLAE RARREKISER MKFLQDLIPG 180 CNKIIGKALV LDEIINYIQS LQRQVEFLSM KLEVVNSDVS SGPKVGMFPS GDLNTLPNEV 240 PRTLFDQQEA DIGLGSQPDW LHVRIDGNFD RTE*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Carubv10017822m

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY072104	4e-82	AY072104.1 Arabidopsis thaliana unknown protein (At5g62610) mRNA, complete cds.
GenBank	AY084578	4e-82	AY084578.1 Arabidopsis thaliana clone 112281 mRNA, complete sequence.
GenBank	AY123023	4e-82	AY123023.1 Arabidopsis thaliana unknown protein (At5g62610) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006291662.1	0.0	transcription factor bHLH79
Swissprot	Q9LV17	1e-106	BH079_ARATH; Transcription factor bHLH79
TrEMBL	R0HHA9	0.0	R0HHA9_9BRAS; Uncharacterized protein
STRING	XP_006291662.1	0.0	(Capsella rubella)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1855	28	78

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G62610.1	1e-103	bHLH family protein

Link Out ? help Back to Top
Phytozome	Carubv10017822m
Entrez Gene	17885664

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]