PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009112028.1

Organism

Brassica rapa

Taxonomic ID

3711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

bHLH

Protein Properties

Length: 280aa MW: 30154.4 Da PI: 5.456

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009112028.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	34.5	3.8e-11	163	209	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h+ +Er RR++i +++ L++++P + +k Ka +L + ++YI+sLq XP_009112028.1 163 HSLAERARREKISEKMTALQDIIPGC----NKIIGKALVLDEIINYIQSLQ 209 999*********************....999***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	2.20E-10	156	213	No hit	No description
SuperFamily	SSF47459	5.1E-17	156	224	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.18	158	208	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	3.6E-17	159	221	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.4E-8	163	209	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	9.9E-10	164	214	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 280 aa Download sequence Send to blast
MDPPLVNDSS FSPANPSSYT LSEIWPFPVN DAVRSGLRLA VNSTPSDKDV STAAAAAAAA 60 EESTVTDLTA GWGGRKARAL NSEEDESSKM VSLSSSGNEV KDSGEKKRKL CGSESGNGDG 120 SMKPEGETSS GGGSKATEQK NKPEPPKDYI HVRARRGQAT DRHSLAERAR REKISEKMTA 180 LQDIIPGCNK IIGKALVLDE IINYIQSLQR QVEFLSMKLE VVNSGPSTGP TIGVFPTGDL 240 GTLPIDLHRN IYEQQEANES RGSHPEWLHM QVDGSFNRTT

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009112028.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009112028.1	0.0	PREDICTED: transcription factor bHLH79
Refseq	XP_013661177.1	0.0	transcription factor bHLH79
Swissprot	Q9LV17	1e-166	BH079_ARATH; Transcription factor bHLH79
TrEMBL	A0A078FUW6	0.0	A0A078FUW6_BRANA; BnaA09g06160D protein
TrEMBL	A0A397XWQ6	0.0	A0A397XWQ6_BRACM; Uncharacterized protein
STRING	Bo9g015060.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1855	28	78

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G62610.1	1e-166	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]