PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g023847m
Common NameCISIN_1g023847mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family bHLH
Protein Properties Length: 277aa    MW: 29822 Da    PI: 5.4422
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g023847mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.29.3e-11157204455
                        HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++YI+sLq
  orange1.1g023847m 157 SHSLAERARREKISERMKILQDLVPGC----NKVIGKALVLDEIINYIQSLQ 204
                        8*************************9....677*****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.71E-18151223IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.16E-10151208No hitNo description
PROSITE profilePS5088815.828153203IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.5E-18153222IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.0E-8157204IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.0E-10159209IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MDPPLVNESS FSAANPSSYS LAEIWPFPIN NGGAGDAGLR MGNMGHGFGE SSALRDGSME  60
ESTVTEQSGG GCGRKRRDLS SEDESSKIVS TTSSANDLND SNGKWMKTSG SKNENGSKAE  120
VEASSAAGNK PAESSKPSEP PKDYIHVRAR RGQATDSHSL AERARREKIS ERMKILQDLV  180
PGCNKVIGKA LVLDEIINYI QSLQRQVEFL SMKLEAVNSR MNLTPTIEGF HPKDLGEQAF  240
DATGMIFGSQ TAREYAQGSQ QDWLHMQVGG SFERAT*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Csi.8870.0callus| flower| fruit| vegetative meristem
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006439701.10.0transcription factor bHLH79
SwissprotQ9LV172e-95BH079_ARATH; Transcription factor bHLH79
TrEMBLA0A067FUM30.0A0A067FUM3_CITSI; Uncharacterized protein
TrEMBLA0A2H5NFU80.0A0A2H5NFU8_CITUN; Uncharacterized protein
STRINGXP_006439701.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM18552878
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62610.11e-81bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]