PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | orange1.1g023847m | ||||||||
Common Name | CISIN_1g023847mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | bHLH | ||||||||
Protein Properties | Length: 277aa MW: 29822 Da PI: 5.4422 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 33.2 | 9.3e-11 | 157 | 204 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++YI+sLq orange1.1g023847m 157 SHSLAERARREKISERMKILQDLVPGC----NKVIGKALVLDEIINYIQSLQ 204 8*************************9....677*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 4.71E-18 | 151 | 223 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.16E-10 | 151 | 208 | No hit | No description |
PROSITE profile | PS50888 | 15.828 | 153 | 203 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 3.5E-18 | 153 | 222 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 4.0E-8 | 157 | 204 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.0E-10 | 159 | 209 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 277 aa Download sequence Send to blast |
MDPPLVNESS FSAANPSSYS LAEIWPFPIN NGGAGDAGLR MGNMGHGFGE SSALRDGSME 60 ESTVTEQSGG GCGRKRRDLS SEDESSKIVS TTSSANDLND SNGKWMKTSG SKNENGSKAE 120 VEASSAAGNK PAESSKPSEP PKDYIHVRAR RGQATDSHSL AERARREKIS ERMKILQDLV 180 PGCNKVIGKA LVLDEIINYI QSLQRQVEFL SMKLEAVNSR MNLTPTIEGF HPKDLGEQAF 240 DATGMIFGSQ TAREYAQGSQ QDWLHMQVGG SFERAT* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Csi.887 | 0.0 | callus| flower| fruit| vegetative meristem |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006439701.1 | 0.0 | transcription factor bHLH79 | ||||
Swissprot | Q9LV17 | 2e-95 | BH079_ARATH; Transcription factor bHLH79 | ||||
TrEMBL | A0A067FUM3 | 0.0 | A0A067FUM3_CITSI; Uncharacterized protein | ||||
TrEMBL | A0A2H5NFU8 | 0.0 | A0A2H5NFU8_CITUN; Uncharacterized protein | ||||
STRING | XP_006439701.1 | 0.0 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1855 | 28 | 78 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G62610.1 | 1e-81 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | orange1.1g023847m |
Publications ? help Back to Top | |||
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