PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Eucgr.K02908.1.p

Common Name

EUGRSUZ_K02908, LOC104426324

Organism

Eucalyptus grandis

Taxonomic ID

71139

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

bHLH

Protein Properties

Length: 278aa MW: 29828.2 Da PI: 6.3737

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Eucgr.K02908.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	35.5	1.7e-11	158	205	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka iL + ++YI+sLq Eucgr.K02908.1.p 158 SHSLAERARREKISERMKILQDLVPGC----NKVIGKALILDEIINYIQSLQ 205 8***********************9....677***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	6.44E-11	152	209	No hit	No description
SuperFamily	SSF47459	2.09E-18	152	224	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	16.037	154	204	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.2E-18	154	223	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	8.4E-9	158	205	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.7E-11	160	210	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 278 aa Download sequence Send to blast
MDPPIVNESS FSAANPSSYS LDEIWPFNGE PGNGGLGLRM GNLSGFLDGQ MNRDGSAEVS 60 TVTEQSGGGG IGRKRKDVSS EDESSKMVST SSADDLNMSN GKRIKSLVSR HDNGGSRAEG 120 ESSSAAGDKQ AGQIAKPSEP PKKDYIHVRA RRGQATDSHS LAERARREKI SERMKILQDL 180 VPGCNKVIGK ALILDEIINY IQSLQNQVEF LSMKLEAVNS RMNINPTIDG FPAKDLGGQP 240 FDATGVMHAS QAARQYSQGS QSEWLHMQLG GGFERPM*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Eucgr.K02908.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010037625.1	0.0	PREDICTED: transcription factor bHLH79
Swissprot	Q9LV17	3e-86	BH079_ARATH; Transcription factor bHLH79
TrEMBL	A0A059A7P4	0.0	A0A059A7P4_EUCGR; Uncharacterized protein
STRING	XP_010037625.1	0.0	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1855	28	78

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G59640.1	2e-71	BIG PETAL P

Link Out ? help Back to Top
Phytozome	Eucgr.K02908.1.p
Entrez Gene	104426324

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]