PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A03G1273
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 248aa    MW: 27542.9 Da    PI: 7.6208
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A03G1273genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.57.8e-11133180455
                  HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++YI+sLq
  Gh_A03G1273 133 SHSLAERARREKISERMKILQDLVPGC----NKVIGKALVLDEIINYIQSLQ 180
                  8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.58E-18127198IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.19E-10127184No hitNo description
Gene3DG3DSA:4.10.280.103.3E-18129198IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.828129179IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.4E-8133180IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.0E-10135185IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MDPPAMMSDG GYNLAEIWQY PVSESGLRRG QFGNVPPPHY DHPNPEVSGG MRRRRDGEDE  60
AAKVVSTSSG NGVSFGDGKR LKASGCREEN DDSKVEAAEP SSGKPVEQKA KPPEPPKQDY  120
IHVRARRGQA TDSHSLAERA RREKISERMK ILQDLVPGCN KVIGKALVLD EIINYIQSLQ  180
RQVEFLSMKL EAVNSRMNPT IEVFPLKDYG QQTFDATGMA FGPQATREYS RGASPEWLHI  240
RGGFERTT
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.209800.0boll| ovule| root
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that forms a ternary complex with RSS3 and TIFY11A/JAZ9 to negatively regulate jasmonate-responsive genes. {ECO:0000269|PubMed:23715469}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF2835062e-68AF283506.2 Catharanthus roseus MYC1 (myc1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016692675.10.0PREDICTED: transcription factor BPE
RefseqXP_017632263.10.0PREDICTED: transcription factor BPE isoform X1
RefseqXP_017632264.10.0PREDICTED: transcription factor BPE isoform X2
SwissprotQ69WS34e-78BH094_ORYSJ; Transcription factor BHLH094
TrEMBLA0A0B0MJ100.0A0A0B0MJ10_GOSAR; Transcription factor BPE-like protein
TrEMBLA0A1U8JR050.0A0A1U8JR05_GOSHI; transcription factor BPE
TrEMBLA0A2P5WU510.0A0A2P5WU51_GOSBA; Uncharacterized protein
STRINGGorai.005G188700.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM18552878
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G59640.17e-91BIG PETAL P