PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK43332.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family bHLH
Protein Properties Length: 271aa    MW: 29799.4 Da    PI: 6.2584
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK43332.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.91.1e-10154201455
                 HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 +h+ +Er RR++i +++  L++++P +    +k   Ka +L + ++YI+sLq
  KFK43332.1 154 SHSLAERARREKISERMKILQDIVPGC----NKVIGKALVLDEIINYIQSLQ 201
                 8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.88E-10148205No hitNo description
SuperFamilySSF474591.09E-17148219IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.8E-18150218IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.542150200IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.8E-8154201IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.4E-10156206IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048446Biological Processpetal morphogenesis
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MDPGGMMNEA GTYNMAEIWP FPIIGGVNGH SSIRNGVSFN GPNLVHQFTD SNLISNTNCV  60
DPARMTHALS QAVVAGISGA RKRRDTAEEK VGSGSDGNEA NDGESKKQKT TVCVDEACDG  120
KVETGPLEDQ KKQLPEPPKD YIHVRARRGQ ATDSHSLAER ARREKISERM KILQDIVPGC  180
NKVIGKALVL DEIINYIQSL QRQVEFLSMK LEAVNSRMNP GIEGFPPKEF DQQPFENPGM  240
QFGSQPTREY SRGASPEWLH MQVGGGFERT S
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the control of petal size, by interfering with postmitotic cell expansion to limit final petal cell size. {ECO:0000269|PubMed:16902407}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00207DAPTransfer from AT1G59640Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK43332.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Isoform 1 is up-regulated by PI/AP3, SEP2, SEP3 and AP1, but repressed by AG. {ECO:0000269|PubMed:16902407}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0863731e-119AY086373.1 Arabidopsis thaliana clone 24644 mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006417467.11e-174transcription factor BPE
SwissprotQ0JXE72e-98BPE_ARATH; Transcription factor BPE
TrEMBLA0A087HMI00.0A0A087HMI0_ARAAL; Uncharacterized protein
STRINGA0A087HMI00.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM18552878
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G59640.11e-130BIG PETAL P
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]