PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.13768s0007.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family bHLH
Protein Properties Length: 273aa    MW: 30314.9 Da    PI: 5.2838
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.13768s0007.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.12.1e-10155201555
                           HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                   HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                           h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++YI+sLq
  Cagra.13768s0007.1.p 155 HSLAERARREKISERMKFLQDLIPGC----NKIIGKALVLDEIINYIQSLQ 201
                           999***********************....999*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.67E-10148205No hitNo description
SuperFamilySSF474596.15E-17148215IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.269150200IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.3E-17151218IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.0E-8155201IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-8156206IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
MSDPEFLMDP PVVNESPFSE IWPFSVNYGI HLPNPGQDFT SRGEVFGYSG NNYISATEES  60
TVTELTGEGR KRRPLTSQDE SSKILSSCTS VTRLKDSSKK KKMKVCGSEG ESEDGLRPEG  120
ETSSGGRSKA TTEEKSPPKD YIHVRARRGQ ATDRHSLAER ARREKISERM KFLQDLIPGC  180
NKIIGKALVL DEIINYIQSL QRQVEFLSMK LEVVNSDVSS GPKVGMFPSG DLNTLPNEVP  240
RTLFDQQEAD IGLGSQPDWL HVRIDGNFDR TE*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.13768s0007.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0721042e-77AY072104.1 Arabidopsis thaliana unknown protein (At5g62610) mRNA, complete cds.
GenBankAY0845782e-77AY084578.1 Arabidopsis thaliana clone 112281 mRNA, complete sequence.
GenBankAY1230232e-77AY123023.1 Arabidopsis thaliana unknown protein (At5g62610) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006291662.10.0transcription factor bHLH79
SwissprotQ9LV171e-104BH079_ARATH; Transcription factor bHLH79
TrEMBLR0HHA90.0R0HHA9_9BRAS; Uncharacterized protein
STRINGCagra.13768s0007.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM18552878
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62610.11e-101bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]