PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D12G0475
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 262aa    MW: 28892.2 Da    PI: 7.718
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D12G0475genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.38.5e-11147194455
                  HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++YI+sLq
  Gh_D12G0475 147 SHSLAERARREKISERMKILQDLVPGC----NKVIGKALVLDEIINYIQSLQ 194
                  8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474599.16E-18141210IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.36E-10141198No hitNo description
Gene3DG3DSA:4.10.280.107.3E-18143211IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.828143193IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.7E-8147194IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.0E-10149199IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MDPPAMMSDG RYNLAEIWQY PMSESGISRG QFGHGLAQFG DPSREVSGND PGSLEQQQRR  60
GGMRRRRDGE VETAKVVSTS STSSGNAVNN GEGKRIKAAG GREQNHESRV EAEPSSGKLV  120
EEKAQPSEPP KQDYIHVRAR RGQATDSHSL AERARREKIS ERMKILQDLV PGCNKVIGKA  180
LVLDEIINYI QSLQRQVEFL SMKLEAVNSG INPAIEVFPR KDYGQQAFDA TGMAFGSQVI  240
REYSGGTSPE WLHIGSAFER TT
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.102240.0boll| ovule
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that forms a ternary complex with RSS3 and TIFY11A/JAZ9 to negatively regulate jasmonate-responsive genes. {ECO:0000269|PubMed:23715469}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016734695.10.0PREDICTED: transcription factor BPE-like
SwissprotQ69WS31e-75BH094_ORYSJ; Transcription factor BHLH094
TrEMBLA0A1U8N6V30.0A0A1U8N6V3_GOSHI; transcription factor BPE-like
STRINGGorai.008G053100.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM18552878
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G59640.19e-87BIG PETAL P