PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_D11G0306 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | bHLH | ||||||||
Protein Properties | Length: 285aa MW: 30690.2 Da PI: 6.3755 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 33.3 | 8.5e-11 | 166 | 213 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR+ri +++ L++l+P + +k Ka +L + ++YI+sLq Gh_D11G0306 166 SHSLAERARRERISERMKILQDLVPGC----NKVIGKALVLDEIINYIQSLQ 213 8*************************9....677*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 7.38E-11 | 160 | 217 | No hit | No description |
SuperFamily | SSF47459 | 4.45E-18 | 160 | 231 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 4.0E-18 | 162 | 231 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.815 | 162 | 212 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 3.5E-8 | 166 | 213 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 7.0E-11 | 168 | 218 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 285 aa Download sequence Send to blast |
MDPPLINESS FSAANPSAYS LAEIWPFLIN PGSDPTAVTG GGLGLRIGNL GGFGETSGLR 60 DGSMEESTVT EQSVGCGGGR KRKELSSEDE SSKIVSTTTS ANELNDSNGK RMKTPVSKNG 120 NTGSKEAEVE ASSADGSKPD KNSKPAEPPK QDYIHVRARR GQATDSHSLA ERARRERISE 180 RMKILQDLVP GCNKVIGKAL VLDEIINYIQ SLQQQVEFLS MKLEAVNSRI NVNPSFEGFH 240 SKDLGLQPID GAGMIFGSQT AREYAQGLHP EWLQMHVGGN FKRAT |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ghi.16515 | 0.0 | boll| ovule |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY779337 | 0.0 | AY779337.1 Gossypium hirsutum bHLH transcription factor mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012488873.1 | 0.0 | PREDICTED: transcription factor bHLH79 isoform X1 | ||||
Swissprot | Q9LV17 | 5e-88 | BH079_ARATH; Transcription factor bHLH79 | ||||
TrEMBL | A0A0D2P244 | 0.0 | A0A0D2P244_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.007G034400.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1855 | 28 | 78 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G62610.1 | 3e-81 | bHLH family protein |
Publications ? help Back to Top | |||
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