PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676778830
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family bHLH
Protein Properties Length: 275aa    MW: 30624.5 Da    PI: 7.5451
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676778830genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH20.67.8e-07147173430
                HHHHHHHHHHHHHHHHHHHHHCTSCCC CS
        HLH   4 ahnerErrRRdriNsafeeLrellPka 30 
                +h+ +Er RR++i +++  L++l+P +
  676778830 147 SHSLAERARREKISERMKILQDLVPGC 173
                8************************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.27E-8141175IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.06E-5141175No hitNo description
PROSITE profilePS5088811.077143212IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.5E-8146175IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.2E-4147174IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MDPSGMMNEG APFNLSEIWQ FPMNGVSTGD SFADSSLTTA ATGHARVSHA LSQAVIEGIS  60
RAWKRGYESE SAKVVSTSNC NVHMATLGFD QDECENKRQR QKIDEVVCGN KAEAGSPETN  120
MDQKKQQLDL KKDYIHVRAR RGQATDSHSL AERARREKIS ERMKILQDLV PGCNKFLSVK  180
LEAVNSRMNP GIEVFPPKEV IILMTTKSIL YTLVLLASVV ASLYYFGKTD QFAQQAFENQ  240
EMQFGSQTRR EYSRGASPEW LHMQIGSGGF ERASS
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the control of petal size, by interfering with postmitotic cell expansion to limit final petal cell size. {ECO:0000269|PubMed:16902407}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap676778830
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Isoform 1 is up-regulated by PI/AP3, SEP2, SEP3 and AP1, but repressed by AG. {ECO:0000269|PubMed:16902407}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM2697531e-54AM269753.1 Arabidopsis thaliana mRNA for basic helix loop helix protein (bpe gene), BPE normal splice form.
GenBankAM2697541e-54AM269754.1 Arabidopsis thaliana mRNA for basic helix loop helix protein (bpe gene), BPEp splice form.
GenBankAY0863731e-54AY086373.1 Arabidopsis thaliana clone 24644 mRNA, complete sequence.
GenBankBT0039641e-54BT003964.1 Arabidopsis thaliana clone RAFL15-08-I05 (R20798) putative bHLH protein (At1g59640) mRNA, complete cds.
GenBankBT0050641e-54BT005064.1 Arabidopsis thaliana clone U20798 putative bHLH protein (At1g59640) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006302693.11e-113transcription factor BPE
RefseqXP_006392265.11e-113transcription factor BPE
SwissprotQ0JXE72e-91BPE_ARATH; Transcription factor BPE
TrEMBLR0GIP91e-111R0GIP9_9BRAS; Uncharacterized protein
TrEMBLV4ME771e-111V4ME77_EUTSA; Uncharacterized protein
STRINGCagra.4331s0005.1.p1e-113(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM18552878
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G59640.11e-106BIG PETAL P
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]