PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG045701t1
Common NameTCM_045701
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family bHLH
Protein Properties Length: 265aa    MW: 28808.1 Da    PI: 6.3734
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG045701t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.38.7e-11145192455
                       HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++YI+sLq
  Thecc1EG045701t1 145 SHSLAERARREKISERMKILQDLVPGC----NKVIGKALVLDEIINYIQSLQ 192
                       8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.56E-10139196No hitNo description
SuperFamilySSF474593.93E-18139211IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.828141191IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.4E-18141211IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.7E-8145192IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.0E-10147197IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MDPPLINESS FSAANLSSYS LAEIWPFPIN SRSDPNVTTA GRLGVRMGTL GGFGESSGHR  60
DGFGADLSSE DESSKMVSTT SANEFNDSNG KRVKSSTKNE NVISKAEVET SSAAGSKPEQ  120
YGKPTEPPKQ DYIHVRARRG QATDSHSLAE RARREKISER MKILQDLVPG CNKVIGKALV  180
LDEIINYIQS LQRQVEFLSM KLEAVNSRMN MSPSIEGFHS KDLGSQPYDA AGMIFGAQAA  240
REYAQGSQPE WLQMHVGGNF ERAT*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007099736.20.0PREDICTED: transcription factor bHLH79 isoform X1
SwissprotQ9LV172e-84BH079_ARATH; Transcription factor bHLH79
TrEMBLS1S3N60.0S1S3N6_THECC; Basic helix-loop-helix DNA-binding superfamily protein isoform 1
STRINGEOY202810.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM18552878
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G59640.17e-75BIG PETAL P
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]