PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676723328
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family bHLH
Protein Properties Length: 298aa    MW: 32676.6 Da    PI: 6.2555
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676723328genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.41.4e-09154219455
                HHHHHHHHHHHHHHHHHHHHHCTSCCC.................TTS-STCHHHHHHHHHHHHHHH CS
        HLH   4 ahnerErrRRdriNsafeeLrellPkas..............kapskKlsKaeiLekAveYIksLq 55 
                +h+ +Er RR++i +++  L++l+P +               + + +   Ka +L + ++YI+sLq
  676723328 154 SHSLAERARREKISERMKILQDLVPGCNksqniwivlqqrsvSLSTQVIGKALVLDEIINYIQSLQ 219
                8*************************888********9999666666699***************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.19E-13148227IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.39E-10148223No hitNo description
PROSITE profilePS5088815.224150218IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.6E-13154224IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.8E-7154219IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.5E-9156224IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048446Biological Processpetal morphogenesis
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MDPGGMMNEA GTYNLAEIWP FPMNGGATGH SSMRSGVSFG GPNLVHQFAD SNLINNTNNC  60
GDPARMSHAL SQAVVAGIAG VRKRRDSAED KVVSASDGND ANDGESKKQK TSGCEDEVCD  120
GTAETGSMDQ KKQLPEPPKD YIHVRARRGQ ATDSHSLAER ARREKISERM KILQDLVPGC  180
NKSQNIWIVL QQRSVSLSTQ VIGKALVLDE IINYIQSLQR QVEVQPYSLC LSFLSMKIEA  240
VNSRMNPGIE VFPPKEFDQQ PFENPGMQFG SQATREYSRG ASPEWLHMQV GGGFERTS
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the control of petal size, by interfering with postmitotic cell expansion to limit final petal cell size. {ECO:0000269|PubMed:16902407}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00207DAPTransfer from AT1G59640Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap676723328
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Isoform 1 is up-regulated by PI/AP3, SEP2, SEP3 and AP1, but repressed by AG. {ECO:0000269|PubMed:16902407}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0282323e-40AB028232.1 Arabidopsis thaliana ZCW32 mRNA for helix-loop-helix protein homolog, complete cds.
GenBankAM2697533e-40AM269753.1 Arabidopsis thaliana mRNA for basic helix loop helix protein (bpe gene), BPE normal splice form.
GenBankAM2697543e-40AM269754.1 Arabidopsis thaliana mRNA for basic helix loop helix protein (bpe gene), BPEp splice form.
GenBankAY0863733e-40AY086373.1 Arabidopsis thaliana clone 24644 mRNA, complete sequence.
GenBankBT0039643e-40BT003964.1 Arabidopsis thaliana clone RAFL15-08-I05 (R20798) putative bHLH protein (At1g59640) mRNA, complete cds.
GenBankBT0050643e-40BT005064.1 Arabidopsis thaliana clone U20798 putative bHLH protein (At1g59640) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006417467.11e-180transcription factor BPE
SwissprotQ0JXE79e-97BPE_ARATH; Transcription factor BPE
TrEMBLV4KDL11e-178V4KDL1_EUTSA; Uncharacterized protein
STRINGXP_006417467.11e-179(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM18552878
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G59640.11e-129BIG PETAL P
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]