PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araha.2719s0004.1.p

Organism

Arabidopsis halleri

Taxonomic ID

81970

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

bHLH

Protein Properties

Length: 267aa MW: 29605.2 Da PI: 4.8138

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araha.2719s0004.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	31.4	3.5e-10	157	203	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h+ +Er RR++i +++ L++l+P + +k Ka +L + ++YI+sLq Araha.2719s0004.1.p 157 HSLAERARREKISERMKFLQDLIPGC----DKIIGKALVLDEIINYIQSLQ 203 899********************9....899***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	3.97E-10	150	207	No hit	No description
SuperFamily	SSF47459	9.81E-17	150	217	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.351	152	202	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	7.6E-17	154	220	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.1E-7	157	203	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.4E-8	158	208	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 267 aa Download sequence Send to blast
MSDPELLNPV MVPPVVNESS FSEIWPFSVN YDVRLPLNSG QDFISRGELF GYSGNSYISA 60 AEESTVTEQT GGGRKRRALT SQDESSKMLS SCTSVNRLKE SSKKKMKVCV FEGETEDGLR 120 PEGETSSGGG SKETEEKSSP KDYIHVRARR GQATDPHSLA ERARREKISE RMKFLQDLIP 180 GCDKIIGKAL VLDEIINYIQ SLQRQVEFLS MKLEVVNSDV STGPKVGMFP SGELNTLPIE 240 VQRTMFDQQE ADESRGSQPD WLHMGD*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araha.2719s0004.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006291662.1	1e-153	transcription factor bHLH79
Swissprot	Q9LV17	1e-102	BH079_ARATH; Transcription factor bHLH79
TrEMBL	D7LRG1	1e-173	D7LRG1_ARALL; Uncharacterized protein
STRING	fgenesh1_pg.C_scaffold_5001270	1e-174	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1855	28	78

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G62610.1	4e-96	bHLH family protein

Link Out ? help Back to Top
Phytozome	Araha.2719s0004.1.p

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]