PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG045748t1 | ||||||||
Common Name | TCM_045748 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | bHLH | ||||||||
Protein Properties | Length: 284aa MW: 30843.3 Da PI: 6.3786 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 33.2 | 9.7e-11 | 164 | 211 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++YI+sLq Thecc1EG045748t1 164 SHSLAERARREKISERMKILQDLVPGC----NKVIGKALVLDEIINYIQSLQ 211 8*************************9....677*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 6.07E-10 | 158 | 215 | No hit | No description |
SuperFamily | SSF47459 | 4.45E-18 | 158 | 230 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.828 | 160 | 210 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.6E-18 | 160 | 230 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 4.2E-8 | 164 | 211 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.0E-10 | 166 | 216 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 284 aa Download sequence Send to blast |
MDPPLINESS FSAANPSSYS LAEIWPFPIN PRSDPNVATA GRLGVRMGNL GGFGESSGHR 60 DGSMEESTVT EQSVGCGGRR KRKDLSSEDE SSKIVSTTSA NELNDSNGKR MKSSSTKNEN 120 ADSKAELEAS SAAGSKPEQY SKPAEPPKQD YIHVRARRGQ ATDSHSLAER ARREKISERM 180 KILQDLVPGC NKVIGKALVL DEIINYIQSL QRQVEFLSMK LEAVNSRMNM SPSIEGFHSK 240 DLGSQPFDAA GMIFGSQAAR EYAQGSEPEW LQMHVGGNFE RAT* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 78 | 83 | RRKRKD |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007099748.1 | 0.0 | PREDICTED: transcription factor bHLH79 | ||||
Swissprot | Q9LV17 | 3e-95 | BH079_ARATH; Transcription factor bHLH79 | ||||
TrEMBL | S1RTL5 | 0.0 | S1RTL5_THECC; Basic helix-loop-helix DNA-binding superfamily protein | ||||
STRING | EOY20293 | 0.0 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1855 | 28 | 78 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G62610.1 | 2e-87 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG045748t1 |
Entrez Gene | 18507045 |
Publications ? help Back to Top | |||
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