PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG045748t1
Common NameTCM_045748
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family bHLH
Protein Properties Length: 284aa    MW: 30843.3 Da    PI: 6.3786
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG045748t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.29.7e-11164211455
                       HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++YI+sLq
  Thecc1EG045748t1 164 SHSLAERARREKISERMKILQDLVPGC----NKVIGKALVLDEIINYIQSLQ 211
                       8*************************9....677*****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000836.07E-10158215No hitNo description
SuperFamilySSF474594.45E-18158230IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.828160210IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.6E-18160230IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.2E-8164211IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.0E-10166216IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
MDPPLINESS FSAANPSSYS LAEIWPFPIN PRSDPNVATA GRLGVRMGNL GGFGESSGHR  60
DGSMEESTVT EQSVGCGGRR KRKDLSSEDE SSKIVSTTSA NELNDSNGKR MKSSSTKNEN  120
ADSKAELEAS SAAGSKPEQY SKPAEPPKQD YIHVRARRGQ ATDSHSLAER ARREKISERM  180
KILQDLVPGC NKVIGKALVL DEIINYIQSL QRQVEFLSMK LEAVNSRMNM SPSIEGFHSK  240
DLGSQPFDAA GMIFGSQAAR EYAQGSEPEW LQMHVGGNFE RAT*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17883RRKRKD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007099748.10.0PREDICTED: transcription factor bHLH79
SwissprotQ9LV173e-95BH079_ARATH; Transcription factor bHLH79
TrEMBLS1RTL50.0S1RTL5_THECC; Basic helix-loop-helix DNA-binding superfamily protein
STRINGEOY202930.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM18552878
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62610.12e-87bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]