PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa06g021460.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | bHLH | ||||||||
Protein Properties | Length: 259aa MW: 28878.4 Da PI: 5.0034 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 32.2 | 1.9e-10 | 141 | 187 | 5 | 55 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h+ +Er RR++i +++ L++l+P + +k Ka +L + ++YI+sLq Csa06g021460.1 141 HSLAERARREKISERMKFLQDLIPGC----NKIIGKALVLDEIINYIQSLQ 187 999***********************....999*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 9.74E-10 | 134 | 191 | No hit | No description |
SuperFamily | SSF47459 | 6.02E-17 | 134 | 201 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.269 | 136 | 186 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 5.1E-17 | 137 | 204 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 7.3E-8 | 141 | 187 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.2E-8 | 142 | 192 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 259 aa Download sequence Send to blast |
MSDPELVMDP PVVNESSFSE IWPFSVNYGI QLPLNLGQDF TCRSELFGYS GNSYISAAEE 60 STVTDLTGGG RKRRPLTSVT RLKESRKKKM KVCGSEGETE DGLRPEDETS SGGGGKETEE 120 KSPAKDYIHV RARRGQATDR HSLAERARRE KISERMKFLQ DLIPGCNKII GKALVLDEII 180 NYIQSLQRQV EFLSMKLEVV NSDVSSGPEV GMFASGDLNT LPIEVRRTLF DQQEADKALG 240 SQPDWLHMRI DENFERTA* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 71 | 88 | KRRPLTSVTRLKESRKKK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa06g021460.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY072104 | 4e-76 | AY072104.1 Arabidopsis thaliana unknown protein (At5g62610) mRNA, complete cds. | |||
GenBank | AY084578 | 4e-76 | AY084578.1 Arabidopsis thaliana clone 112281 mRNA, complete sequence. | |||
GenBank | AY123023 | 4e-76 | AY123023.1 Arabidopsis thaliana unknown protein (At5g62610) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010515095.1 | 0.0 | PREDICTED: transcription factor bHLH79 isoform X2 | ||||
Swissprot | Q9LV17 | 1e-105 | BH079_ARATH; Transcription factor bHLH79 | ||||
TrEMBL | R0HHA9 | 1e-155 | R0HHA9_9BRAS; Uncharacterized protein | ||||
STRING | XP_010426245.1 | 1e-159 | (Camelina sativa) | ||||
STRING | XP_010515094.1 | 1e-158 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1855 | 28 | 78 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G62610.1 | 1e-104 | bHLH family protein |
Publications ? help Back to Top | |||
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