PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013585673.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | bHLH | ||||||||
Protein Properties | Length: 266aa MW: 29194.7 Da PI: 6.2567 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 33.3 | 8.7e-11 | 150 | 197 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++YI+sLq XP_013585673.1 150 SHSLAERARREKISERMKILQDLVPGC----NKVIGKALVLDEIINYIQSLQ 197 8*************************9....677*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 5.76E-18 | 144 | 215 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.23E-10 | 144 | 201 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 4.3E-18 | 146 | 214 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.828 | 146 | 196 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 3.8E-8 | 150 | 197 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.0E-10 | 152 | 202 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0048446 | Biological Process | petal morphogenesis | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 266 aa Download sequence Send to blast |
MDPGGMMNEA GAYNLAEIWP YPINGGATVN TSMRSGVSFG GPNLVHQFSD SNLISNTNCN 60 DPARMSHALS QAVVAGIAGA RKRRDAAEDN KVVSGSDGHD ANDGDSKKQK TTGCEDEVET 120 GTLDQKKQLL PEPPKDYIHV RARRGQATDS HSLAERARRE KISERMKILQ DLVPGCNKVI 180 GKALVLDEII NYIQSLQRQV EFLSMKLEAV NSRMTPGIEV FPPKEFDQQT FENQGMQFGA 240 QATREYSRGA SPEWLHMQVG GGFERS |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Isoform 1 is specifically expressed in flowers, mostly in petals, inflorescence and flower buds. Isoform 2 is expressed ubiquitously (leaves, flowers and stems). {ECO:0000269|PubMed:16902407}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the control of petal size, by interfering with postmitotic cell expansion to limit final petal cell size. {ECO:0000269|PubMed:16902407}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00207 | DAP | Transfer from AT1G59640 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013585673.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Isoform 1 is up-regulated by PI/AP3, SEP2, SEP3 and AP1, but repressed by AG. {ECO:0000269|PubMed:16902407}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY086373 | 1e-107 | AY086373.1 Arabidopsis thaliana clone 24644 mRNA, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013585673.1 | 0.0 | PREDICTED: transcription factor BPE-like | ||||
Swissprot | Q0JXE7 | 1e-97 | BPE_ARATH; Transcription factor BPE | ||||
TrEMBL | A0A0D3C920 | 0.0 | A0A0D3C920_BRAOL; Uncharacterized protein (Fragment) | ||||
STRING | Bo5g010880.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1855 | 28 | 78 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G59640.1 | 1e-127 | BIG PETAL P |
Publications ? help Back to Top | |||
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