PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp1g09050
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family bHLH
Protein Properties Length: 267aa    MW: 29254.7 Da    PI: 5.9807
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp1g09050genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.38.8e-11150197455
                HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++YI+sLq
  Tp1g09050 150 SHSLAERARREKISERMKILQDLVPGC----NKVIGKALVLDEIINYIQSLQ 197
                8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000838.41E-11144201No hitNo description
SuperFamilySSF474596.15E-18144215IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.9E-18146215IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.828146196IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.8E-8150197IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.0E-10152202IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MDPGGMMNEA GTYNLPEIWP FPINGGATVH SSMRSGVSFG GPNLVHQFAD SNLISTTNCG  60
DPARMGHALS QAVVAGIAGA RKRRDAVEDK AVSGNDENDG DSKKQKTSGC EDEVCDGKAE  120
TGTLDQKKQL PEPPKDYIHV RARRGQATDS HSLAERARRE KISERMKILQ DLVPGCNKVI  180
GKALVLDEII NYIQSLQRQV EFLSMKLEAV NTRMNPGSEV FPPKEFDQQT FENPGMQFSS  240
EATREYSRGA SPEWLHMQVG GGFERTS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
180105RKRRDAVEDKAVSGNDENDGDSKKQK
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the control of petal size, by interfering with postmitotic cell expansion to limit final petal cell size. {ECO:0000269|PubMed:16902407}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp1g09050
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Isoform 1 is up-regulated by PI/AP3, SEP2, SEP3 and AP1, but repressed by AG. {ECO:0000269|PubMed:16902407}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006417467.10.0transcription factor BPE
SwissprotQ0JXE71e-103BPE_ARATH; Transcription factor BPE
TrEMBLV4KDL11e-180V4KDL1_EUTSA; Uncharacterized protein
STRINGXP_006417467.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM18552878
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G59640.11e-134BIG PETAL P
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]