PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10026916m
Common NameCARUB_v10026916mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family bHLH
Protein Properties Length: 284aa    MW: 30627.9 Da    PI: 6.064
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10026916mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.43.9e-11166212555
                      HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      h+ +Er RR++i +++  L++++P +    +k   Ka +L + ++YI+sLq
  Carubv10026916m 166 HSLAERARREKISEKMTALQDIIPGC----NKIIGKALVLDEIINYIQSLQ 212
                      999***********************....999*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474596.67E-17159226IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.83E-10159216No hitNo description
PROSITE profilePS5088815.18161211IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.5E-17162226IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.4E-8166212IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.9E-10167217IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
MDPPLVNDSS FSAANPSSYT LSEIWPFPVN DAVRSGLRLA VNAGRVFNRS EHSGSKDVSV  60
AEESTVTDLT AGWGGRKTRD LNSEDDSSKM VSSSSSGNEL KESGDKKRKL CGSESGNGDC  120
SMRPEGETSS GGGGGGSKAS EQKNKPEPPK DYIHVRARRG QATDRHSLAE RARREKISEK  180
MTALQDIIPG CNKIIGKALV LDEIINYIQS LQRQVEFLSM KLEVVNSGAS SGPTIGVFPS  240
GDLGTLPIDV HRTIYEQQEA NETRGSQPEW LHMQVDGNFN RTT*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
199108LKESGDKKRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10026916m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0721040.0AY072104.1 Arabidopsis thaliana unknown protein (At5g62610) mRNA, complete cds.
GenBankAY0845780.0AY084578.1 Arabidopsis thaliana clone 112281 mRNA, complete sequence.
GenBankAY1230230.0AY123023.1 Arabidopsis thaliana unknown protein (At5g62610) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006280920.10.0transcription factor bHLH79
SwissprotQ9LV170.0BH079_ARATH; Transcription factor bHLH79
TrEMBLR0GRI40.0R0GRI4_9BRAS; Uncharacterized protein
STRINGXP_006280920.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM18552878
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62610.10.0bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]