PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Phylogenetic Tree for OGMP1998
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Subtree rooted at node 130: /---------- Zmw_sc06343.1.g00050.1 [Zoysia matrella] (2) | /-100+ /----- Zpz_sc01720.1.g00010.1.sm.mkhc [Zoysia pacifica] (76) | \-100+ /--99-+ \----- Zjn_sc00013.1.g09230.1.sm.mkhc [Zoysia japonica] (77) | | | \--------------- Oropetium_20150105_23643A [Oropetium thomaeum] (49) | /-76-+ /----- Zmw_sc02357.1.g00160.1 [Zoysia matrella] (40) | | /-58-+ | | | \----- Zpz_sc01026.1.g00140.1.sm.mkhc [Zoysia pacifica] (43) | \----89----+ /-76-+ \---------- Zjn_sc00014.1.g09110.1.am.mkhc [Zoysia japonica] (90) | | | | /----- 462951446 [Eragrostis tef] (29) | \---------100--------+ | \----- 462846785 [Eragrostis tef] (51) | /---------76---------+ /----- Sobic.001G026500.1.p [Sorghum bicolor] (4) | | /-67-+ | | | \----- GRMZM2G138421_P01 [Zea mays] (58) | | /-100+ | | | \---------- GRMZM2G156756_P01 [Zea mays] (86) | | | | \------100------+ /----- Pahal.I01317.1 [Panicum hallii] (39) | | /-100+ | | | \----- Pavir.J062800.1.p [Panicum virgatum] (63) | \-100+ | | /----- Seita.9G022800.1.p [Setaria italica] (41) | \-100+ | \----- Sevir.9G022400.1.p [Setaria viridis] (67) | | /---------- OGLUM03G39810.1 [Oryza glumaepatula] (5) | | | /-99-+ /----- ORGLA03G0367800.1 [Oryza glaberrima] (15) | | \-100+ | | \----- OBART03G39900.1 [Oryza barthii] (25) | /-100-+ | | | /---------- ONIVA03G41820.1 [Oryza nivara] (12) | | | | | | \-100+ /----- LOC_Os03g61760.1 [Oryza sativa japonica] (24) | | | | | /-98-+ \-100+----- BGIOSGA009504-PA [Oryza sativa indica] (48) /-91-+ | | | | | | | \----- ORUFI03G41710.1 [Oryza rufipogon] (53) | | | | | | /-100+ | /----- KN538869.1_FGP001 [Oryza longistaminata] (6) | | | | \-------87------+ | | | | \----- AMDW01037510.1_FGP001 [Oryza longistaminata] (85) | | | | | | /-100+ \-------------------------- OMERI03G36740.1 [Oryza meridionalis] (83) | | | | | | | | /----- OPUNC03G37170.1 [Oryza punctata] (20) | | /-99-+ \-----------100-----------+ | | | | \----- OPUNC03G37130.1 [Oryza punctata] (55) | | | | | | /-100+ \------------------------------------ OB03G47050.1 [Oryza brachyantha] (46) | | | | | | | \----------------------------------------- LPERR03G34030.1 [Leersia perrieri] (35) | | | | | | /----- Traes_4AL_5062917C4.1 [Triticum aestivum] (11) | | | /-100+ /-70-+ | | | \----- TRIUR3_33729-P1 [Triticum urartu] (87) | | | | /-95-+ | | | | | | /----- EMT28202 [Aegilops tauschii] (42) | | | | | \-100+ | | | | /-100-+ \----- Traes_5DL_3CDCC5DFF.2 [Triticum aestivum] (52) | | \-100-+ | | | | | /-100+ \--------------- Traes_5BL_3503725F1.2 [Triticum aestivum] (56) | | | | | | | | | \--------------------- MLOC_4830.4 [Hordeum vulgare] (26) | | |--------100--------+ --91-+ | | | /----- Brast02G372100.1.p [Brachypodium stacei] (72) | | | \---------100--------+ | | | \----- Bradi1g02760.1.p [Brachypodium distachyon] (73) | | | | | | /----- PH01000040G1230 [Phyllostachys heterocycla] (33) | | \-------------------100------------------+ | | \----- PH01000985G0610 [Phyllostachys heterocycla] (50) | | | \--------------------------------------------------------- Aco000696.1 [Ananas comosus] (82) | \-------------------------------------------------------------- Aco007331.1 [Ananas comosus] (59) Subtree rooted at node 171: /--------------------- (130) | | /----- XP_010941481.1 [Elaeis guineensis] (19) /-------------------91-------------------+ /---100---+ | | | \----- PDK_30s1055851g002 [Phoenix dactylifera] (61) | | | | \--82-+ /---------- GSMUA_Achr2P01820_001 [Musa acuminata] (27) | | | | \-100+ /----- GSMUA_Achr3P24520_001 [Musa acuminata] (78) | \-68-+ | \----- GSMUA_Achr5P27280_001 [Musa acuminata] (89) | | /----- OBART01G12250.2 [Oryza barthii] (3) | | | /-100+----- OBART01G12270.1 [Oryza barthii] (64) | | | | | \----- ORGLA01G0103500.1 [Oryza glaberrima] (88) | | | |---------- BGIOSGA003313-PA [Oryza sativa indica] (18) | | | /-100+---------- OGLUM01G13730.3 [Oryza glumaepatula] (47) | | | | | | /----- ORUFI01G13230.3 [Oryza rufipogon] (65) | | |-100+ | /-100-+ | \----- LOC_Os01g18850.1 [Oryza sativa japonica] (74) | | | | | | | \---------- ONIVA01G14480.5 [Oryza nivara] (81) | /-100+ | | | | \--------------- KN538961.1_FGP003 [Oryza longistaminata] (91) | | | | /-100+ \--------------------- OPUNC01G11960.1 [Oryza punctata] (70) | | | | /------100-----+ \-------------------------- LPERR01G11190.1 [Leersia perrieri] (14) | | | | | \------------------------------- OB01G22010.1 [Oryza brachyantha] (9) | | | | /--------------------- MLOC_34539.4 [Hordeum vulgare] (7) | | | | | | /----- Traes_7AS_FB2A769B5.1 [Triticum aestivum] (23) | | | /-100+ | | /-100+ | \----- TRIUR3_24010-P1 [Triticum urartu] (44) | | | | /-100+ --85-+ | | | | \---------- Traes_7BS_7ACA0B10A.2 [Triticum aestivum] (80) | | | \-100-+ | | | | /----- Traes_7DS_3880F0FD0.1 [Triticum aestivum] (32) | | /---100---+ \---100---+ | | | | \----- EMT11716 [Aegilops tauschii] (92) | | | | | | | | /----- Brast01G287500.1.p [Brachypodium stacei] (8) | | | \---------100--------+ | | | \----- Bradi2g11240.2.p [Brachypodium distachyon] (57) | | | | /-100-+ | /----- GRMZM2G133646_P01 [Zea mays] (10) | | | | /-87-+ | | | | | \----- GRMZM2G081127_P01 [Zea mays] (22) | | | | /------100------+ | | | | | \---------- Sobic.003G139900.1.p [Sorghum bicolor] (84) | | | /-51-+ | | | | | | | /----- Sevir.5G029400.1.p [Setaria viridis] (17) | | | | | | /---100---+ | | | | | /-100+ | \----- Seita.5G030800.1.p [Setaria italica] (45) | | | | | | | | | | | | | | | /--99-+ /---------- Pahal.E03219.1 [Panicum hallii] (28) | | | | | | | | | | | | | | | | | | \-100+ /----- Pavir.5KG215300.1.p [Panicum virgatum] (54) | | | | | | \-100+ \-100+ | | | | | | | \----- Pavir.5NG209600.1.p [Panicum virgatum] (66) | | | | | | | | | | | \-100+ \--------------------- Do001886.1 [Dichanthelium oligosanthes] (37) | | | | | | /-93-+ | | | /---------- 462963665 [Eragrostis tef] (16) | | | \-53-+ | | | | | | | /-100+ /----- 462930693 [Eragrostis tef] (60) | | | | | | \-100+ | | | | | | \----- 462930695 [Eragrostis tef] (68) | | | | | | | | | | \------100------+ /----- Zmw_sc02098.1.g00070.1 [Zoysia matrella] (31) | | | | | | | | | | | /-100+----- Zmw_sc02474.1.g00060.1 [Zoysia matrella] (38) | | | | | | | | | | | \-97-+ \----- Zpz_sc01433.1.g00130.1.am.mkhc [Zoysia pacifica] (79) \-84-+ | | | | | | \---------- Oropetium_20150105_22941A [Oropetium thomaeum] (75) | | | | | \----------------------------------------- PH01000920G0420 [Phyllostachys heterocycla] (13) | | | | /----- Aco023516.1 [Ananas comosus] (21) | \----------------------100---------------------+ | \----- Aco021992.1 [Ananas comosus] (71) | | /----- PDK_30s1173791g001 [Phoenix dactylifera] (34) \-------------------------91------------------------+ \----- XP_010943698.1 [Elaeis guineensis] (69) Root part of tree: /------------------------------------------------------------------- Zosma5g00950.1 [Zostera marina] (1) | |------------------------------------------------------------------- Spipo3G0071500 [Spirodela polyrhiza] (36) + | /--------------------------------------------- (171) | | \----------94---------+ /---------------------- PEQU_16477 [Phalaenopsis equestris] (30) \----------100---------+ \---------------------- PEQU_01300 [Phalaenopsis equestris] (62) |