PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PH01000985G0610

Organism

Phyllostachys heterocycla

Taxonomic ID

38705

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys

Family

SBP

Protein Properties

Length: 955aa MW: 104627 Da PI: 5.5152

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PH01000985G0610	genome	ICBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	25.9	2.7e-08	154	176	1	23
--SSTT-----TT--HHHHHTT- CS SBP 1 lCqvegCeadlseakeyhrrhkv 23 +CqvegC adl++ak+yhrrhk+ PH01000985G0610 154 ACQVEGCGADLTTAKDYHRRHKM 176 5********************97 PP
2	SBP	43.2	1e-13	180	209	48	77
SEEETTT--SS--S-STTTT-------S-- CS SBP 48 rfhelsefDeekrsCrrrLakhnerrrkkq 77 rfh l+efDe+krsCrrrLa+hn+rrrk+ PH01000985G0610 180 RFHLLQEFDEGKRSCRRRLAGHNRRRRKAC 209 9**************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	4.9E-9	147	176	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	18.452	152	208	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	2.22E-21	153	212	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	2.9E-7	180	207	IPR004333	Transcription factor, SBP-box
Gene3D	G3DSA:4.10.1100.10	4.5E-4	180	195	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF48403	1.03E-8	724	840	IPR020683	Ankyrin repeat-containing domain
SMART	SM00248	1.7	734	763	IPR002110	Ankyrin repeat
PROSITE profile	PS50297	9.543	734	801	IPR020683	Ankyrin repeat-containing domain
Gene3D	G3DSA:1.25.40.20	1.1E-8	735	845	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	3.36E-9	739	839	No hit	No description
SMART	SM00248	250	780	812	IPR002110	Ankyrin repeat

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 955 aa Download sequence Send to blast
MEAARVGAQS RHLYGGGLGE LDPNRREKRV FGWDLNEWSW DSERFVATPV PAATANGLAL 60 NSSPSSSEEA RAEVARNFNV RGDSDKRKRV VVIDDDDGDD VEDEDLMSNG GGALSLRLGG 120 DGVAGGAVEG GGVNEEERNG KKIRVQGGSS SGPACQVEGC GADLTTAKDY HRRHKMFLYR 180 FHLLQEFDEG KRSCRRRLAG HNRRRRKACP EIAVGGTASI EDKVSSYLLL SLLGICANLN 240 SDNAEHLKGQ ELLSNLWRNL GTVAKSLDPK ELCKLLEACQ SMQNGSNAGT SEAANALLNT 300 AAAEAAGPSN SKVPFVNGGQ YGQASSVVPV QSKATMVATP EPPTCKFKDF DLNNTCNDME 360 GFEDGYEGSP ALAFKATDSP NGPSWIQQDS TQSPPQTSGN SDSTSAQSLS SSNGDAQCRT 420 NKIVFKLFEK VPSDLPPVLR SQILGWLSSS PTDIESYIRP GCIILTVYLR LVESAWRELS 480 DNMSSHLDKL LSSSTDNFWA SGLVFVMVRR QIVFMHNGQV MLDRPLAPNA RHYCKILCVR 540 PVAAPYSATV NFRVEGVNLV GASSRLICSF EGRCIFQEDT AILADDVEHE DTECLNFCCP 600 LSGSRGRGFI EVEDSGFSNG FFPFIIAEQD VCSEVCELES IFESSSHEQA DDDNARNQAL 660 EFLNELGWLL HRANRISEHD TVELPQAAFN LWRFRNLGTF AMEREWCAVT KMLLDLLFMG 720 LVDVGSQSPE QVVLSENLLH TAVRRKSVQM VRFLLRYKAN KSLKGTAETY LFRPDARGPS 780 TFTPLHIAAA TSDAEDVLDA LTDDPGLVGI NVWRNERDET GFTPEDYARQ RGNDAYLNLV 840 QKKIDKHLRK GHVVLGVPSS MCPVITDGVK PGDVSLEIRR SMPMAPQVPR CNICSRQALM 900 YPNSAARTFL YRPAMLTVMG VAAICVCVGI LLHTFPKVYA APTFRWELLE RGAM*

Sequence ? help Back to Top

Protein Sequence Length: 955 aa Download sequence Send to blast

MEAARVGAQS RHLYGGGLGE LDPNRREKRV FGWDLNEWSW DSERFVATPV PAATANGLAL  60
NSSPSSSEEA RAEVARNFNV RGDSDKRKRV VVIDDDDGDD VEDEDLMSNG GGALSLRLGG  120
DGVAGGAVEG GGVNEEERNG KKIRVQGGSS SGPACQVEGC GADLTTAKDY HRRHKMFLYR  180
FHLLQEFDEG KRSCRRRLAG HNRRRRKACP EIAVGGTASI EDKVSSYLLL SLLGICANLN  240
SDNAEHLKGQ ELLSNLWRNL GTVAKSLDPK ELCKLLEACQ SMQNGSNAGT SEAANALLNT  300
AAAEAAGPSN SKVPFVNGGQ YGQASSVVPV QSKATMVATP EPPTCKFKDF DLNNTCNDME  360
GFEDGYEGSP ALAFKATDSP NGPSWIQQDS TQSPPQTSGN SDSTSAQSLS SSNGDAQCRT  420
NKIVFKLFEK VPSDLPPVLR SQILGWLSSS PTDIESYIRP GCIILTVYLR LVESAWRELS  480
DNMSSHLDKL LSSSTDNFWA SGLVFVMVRR QIVFMHNGQV MLDRPLAPNA RHYCKILCVR  540
PVAAPYSATV NFRVEGVNLV GASSRLICSF EGRCIFQEDT AILADDVEHE DTECLNFCCP  600
LSGSRGRGFI EVEDSGFSNG FFPFIIAEQD VCSEVCELES IFESSSHEQA DDDNARNQAL  660
EFLNELGWLL HRANRISEHD TVELPQAAFN LWRFRNLGTF AMEREWCAVT KMLLDLLFMG  720
LVDVGSQSPE QVVLSENLLH TAVRRKSVQM VRFLLRYKAN KSLKGTAETY LFRPDARGPS  780
TFTPLHIAAA TSDAEDVLDA LTDDPGLVGI NVWRNERDET GFTPEDYARQ RGNDAYLNLV  840
QKKIDKHLRK GHVVLGVPSS MCPVITDGVK PGDVSLEIRR SMPMAPQVPR CNICSRQALM  900
YPNSAARTFL YRPAMLTVMG VAAICVCVGI LLHTFPKVYA APTFRWELLE RGAM*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	4e-15	148	207	4	84	squamosa promoter binding protein-like 4
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PH01000985G0610

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015631511.1	0.0	squamosa promoter-binding-like protein 6 isoform X1
Swissprot	Q75LH6	0.0	SPL6_ORYSJ; Squamosa promoter-binding-like protein 6
TrEMBL	A0A3Q8ANT3	0.0	A0A3Q8ANT3_9POAL; Squamosa-promoter binding protein-like protein
STRING	OGLUM03G39810.1	0.0	(Oryza glumipatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1998	38	92

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47070.1	1e-178	squamosa promoter binding protein-like 1

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]