PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G138421_P01
Common NameLOC100191441
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family SBP
Protein Properties Length: 961aa    MW: 105083 Da    PI: 6.0805
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G138421_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP123.21.1e-38147224178
                        --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
                SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                        +Cqve+C adl+  k+yhrrhkvCe+h+ka++++v ++ qrfCqqCsrfh l+efDe++rsCrrrLa+hn+rrrk+++
  GRMZM2G138421_P01 147 ACQVEDCGADLAAEKDYHRRHKVCEKHAKASTAVVGNTVQRFCQQCSRFHLLHEFDEGRRSCRRRLAGHNRRRRKTRP 224
                        5**************************************************************************875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.101.2E-31140209IPR004333Transcription factor, SBP-box
PROSITE profilePS5114131.419145222IPR004333Transcription factor, SBP-box
SuperFamilySSF1036122.62E-36146226IPR004333Transcription factor, SBP-box
PfamPF031109.2E-29148221IPR004333Transcription factor, SBP-box
SMARTSM002480.24743772IPR002110Ankyrin repeat
PROSITE profilePS502979.012743810IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484031.71E-8743848IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.209.9E-8745846IPR020683Ankyrin repeat-containing domain
CDDcd002044.41E-9748842No hitNo description
SMARTSM00248360789819IPR002110Ankyrin repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 961 aa     Download sequence    Send to blast
MEAARFGTQS SHLYGGGLDL NRREKRVFGW DLNDWSWDSQ RFVATPVQQQ AANGSGLNSS  60
PSSSEEAVEE VARNGGFRGD TDKRKRVIDD DETEDQCTVL HGGRSLSLKI GGAAGGVGAM  120
ENSDVNEDNE RNGKKVRVQG GSSSGPACQV EDCGADLAAE KDYHRRHKVC EKHAKASTAV  180
VGNTVQRFCQ QCSRFHLLHE FDEGRRSCRR RLAGHNRRRR KTRPDTAIGG TASIEDKVSN  240
YLLLSLIGIC ANMNSDNAQN ANGQELLSTL LKNLGSVAKS LEPKELCKFL EAYQSLQNGL  300
NAGTSGIANG AEEAAGPSNS KLPSVNDSHY GQASSSVVPV QSKATTVVTP EPASCKLKDF  360
DLNDTCIDME GFEDGQEGSP TPAFKTADSP NCASWMQQDS TQSPPQTSGN SDSTSTQSLS  420
SSNGDTQCRT DKIVFKLFDK VPSDLPPVLR SQILGWLSSS PSDIESHISP GCIILTVYVR  480
LVESAWQELS ENMSLLLGKL LNSSTDDFWA SGLVFVMVRH HLAFMLNGQI MLDRPLAPSS  540
HHYCKILCVR PVAAPYSATI NFRVEGFNLL STSSRLICSF EGHCIFHEDT DSGAENVEYK  600
DRDIECLSFC CSVPGPRGRG FIEVEDSGFS NGFFPFIIAE KDVCAEVSEL ESIFESSSNE  660
HANARDQALE FLNELGWLLH RANRMSKEDE TDTSLAPFNM WRFRNLGVFA MEREWCAVIK  720
MLLDFLFIGL VDVGSRSAEE MVLSENLLHA AVRRKSVNMV RFLLRYKPNK NSKGTAQAYL  780
FRPDALGPSK ITPLHIAAAT SDAEDVLDAL THDPGLIGIS AWSNARDETG FTPEDYARQR  840
GNGAYLNLVQ KKIDKHLGEG HVVLGVPSSI CPVITDGVKP GDVSLEICRA MSASVPGCLL  900
CSRQARMHPS STARTFLYRP AMLTVMGVAV VCVCVGILLH TFPRVYAAPT FRWELLERGP  960
M
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A2e-28141221484squamosa promoter binding protein-like 4
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.1184580.0embryo| endosperm| meristem| pericarp| sheath
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G138421
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:16861571}.
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00633PBMTransfer from PK06791.1Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G138421_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0335290.0BT033529.1 Zea mays full-length cDNA clone ZM_BFb0210E13 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008680968.10.0uncharacterized protein LOC100191441 isoform X1
SwissprotQ75LH60.0SPL6_ORYSJ; Squamosa promoter-binding-like protein 6
TrEMBLA0A1D6GDW80.0A0A1D6GDW8_MAIZE; Squamosa promoter-binding-like protein 1
STRINGGRMZM2G138421_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19983892
Representative plantOGRP25951432
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47070.10.0squamosa promoter binding protein-like 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]