PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PEQU_16477

Organism

Phalaenopsis equestris

Taxonomic ID

78828

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis

Family

SBP

Protein Properties

Length: 962aa MW: 107112 Da PI: 6.9922

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PEQU_16477	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	119.1	2.2e-37	145	219	2	76
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkk 76 Cqv++C a+ls+ k+yhrrhkvCe+h+ka++++v ++ qrfCqqCsrfh l+efDe+krsCrrrLa+hn+rrrk+ PEQU_16477 145 CQVQSCCANLSQSKDYHRRHKVCETHAKASSAVVGNVIQRFCQQCSRFHLLQEFDEGKRSCRRRLAGHNRRRRKT 219 *************************************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	1.7E-30	138	206	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	31.428	142	219	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	7.98E-35	143	220	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	6.5E-28	145	218	IPR004333	Transcription factor, SBP-box
Gene3D	G3DSA:1.25.40.20	6.3E-9	709	844	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	2.92E-12	711	841	No hit	No description
SuperFamily	SSF48403	1.55E-9	737	843	IPR020683	Ankyrin repeat-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 962 aa Download sequence Send to blast
METNFGGDNR QFFAAGSSKR FGKEAQEWDL NDWKWDGDLF MATPVNPGPL NGLNKNLFPD 60 IVLSNSSSSC SDETEFGLGN VLGEADKRRR IVVAEDDEQC DDTGSLTLKL GAHAYPVMEE 120 DFSLPGMKNG KRVMMQASNS NHPKCQVQSC CANLSQSKDY HRRHKVCETH AKASSAVVGN 180 VIQRFCQQCS RFHLLQEFDE GKRSCRRRLA GHNRRRRKTL SGAATPSESS AAGDQSAGYL 240 LISLLRILAN LNSDRSEQSN DQELLSNFLR NIVSLAGSSD GKNSSGLLQA SSDLQKIGTS 300 AGTSGEAANA LISACFDETR QATCSKRLVP EKNCSPDKSP TVDSLQHMLP TACTVASGRE 360 KAFDLNNVYY EEEDGALGCG QSAKQATLDS GYANCPWMLQ DSHQSSPPQA SGNTDSTSNR 420 SPSSSNGEAQ SRTDRIVFKL FGKEPNDFPL VLRAQIFDWL SNSPTDMESY IRPGCIVLTV 480 YLCLEVSMWD ELCHDLGSSL KRLLFLSNDD FWRIGWIYAR VQHHIVFIYN GQVVLNKSLI 540 MERSDCNRIV AVTPIAVPPS SKVNFKVKGY NLVRSTTRLL CSFEGKYLIK ETDEPTIQYS 600 DYSSSGNRNE QLQSLSFSCH IPDTNGRGFI EIMQLQRLNP CFFPFIVAEE DICAEIQVLE 660 ISEELSEKNL NFLHEIGWLL RRSQLRSVQK LSLSRFGPIL RFTIDHDWCA IVKKLLDILF 720 EGNIETYGRS PIDLLMSEYL LHYAVQRNSN LTVKLLLGYK LDKISDGGLN NLFRPDVRGT 780 SGITPLHVAA TSSFAESMLN ILTDDPGQFG VKAWTNARDA TGFTPEDYAR ARGHESYILL 840 LQKKINKITE KCDVVVNMPC KLSLPSDAIY RQSEGLKPAK LHSLGIYNTK SKQSEPPFCK 900 LCEQHLACRS SVRGSLLYRP MLLSMVGIAA VCVCVGLLFK GPPEVMFVYP PFRWELLESG 960 YI

Sequence ? help Back to Top

Protein Sequence Length: 962 aa Download sequence Send to blast

METNFGGDNR QFFAAGSSKR FGKEAQEWDL NDWKWDGDLF MATPVNPGPL NGLNKNLFPD  60
IVLSNSSSSC SDETEFGLGN VLGEADKRRR IVVAEDDEQC DDTGSLTLKL GAHAYPVMEE  120
DFSLPGMKNG KRVMMQASNS NHPKCQVQSC CANLSQSKDY HRRHKVCETH AKASSAVVGN  180
VIQRFCQQCS RFHLLQEFDE GKRSCRRRLA GHNRRRRKTL SGAATPSESS AAGDQSAGYL  240
LISLLRILAN LNSDRSEQSN DQELLSNFLR NIVSLAGSSD GKNSSGLLQA SSDLQKIGTS  300
AGTSGEAANA LISACFDETR QATCSKRLVP EKNCSPDKSP TVDSLQHMLP TACTVASGRE  360
KAFDLNNVYY EEEDGALGCG QSAKQATLDS GYANCPWMLQ DSHQSSPPQA SGNTDSTSNR  420
SPSSSNGEAQ SRTDRIVFKL FGKEPNDFPL VLRAQIFDWL SNSPTDMESY IRPGCIVLTV  480
YLCLEVSMWD ELCHDLGSSL KRLLFLSNDD FWRIGWIYAR VQHHIVFIYN GQVVLNKSLI  540
MERSDCNRIV AVTPIAVPPS SKVNFKVKGY NLVRSTTRLL CSFEGKYLIK ETDEPTIQYS  600
DYSSSGNRNE QLQSLSFSCH IPDTNGRGFI EIMQLQRLNP CFFPFIVAEE DICAEIQVLE  660
ISEELSEKNL NFLHEIGWLL RRSQLRSVQK LSLSRFGPIL RFTIDHDWCA IVKKLLDILF  720
EGNIETYGRS PIDLLMSEYL LHYAVQRNSN LTVKLLLGYK LDKISDGGLN NLFRPDVRGT  780
SGITPLHVAA TSSFAESMLN ILTDDPGQFG VKAWTNARDA TGFTPEDYAR ARGHESYILL  840
LQKKINKITE KCDVVVNMPC KLSLPSDAIY RQSEGLKPAK LHSLGIYNTK SKQSEPPFCK  900
LCEQHLACRS SVRGSLLYRP MLLSMVGIAA VCVCVGLLFK GPPEVMFVYP PFRWELLESG  960
YI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	2e-29	145	218	11	84	squamosa promoter binding protein-like 4
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	86	90	KRRRI

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00633	PBM	Transfer from PK06791.1	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020575747.1	0.0	LOW QUALITY PROTEIN: squamosa promoter-binding-like protein 1
TrEMBL	A0A2I0V7E8	0.0	A0A2I0V7E8_9ASPA; Squamosa promoter-binding-like protein 12
STRING	XP_008810336.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1998	38	92

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47070.1	0.0	squamosa promoter binding protein-like 1