PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Do001886.1

Organism

Dichanthelium oligosanthes

Taxonomic ID

888268

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium

Family

SBP

Protein Properties

Length: 729aa MW: 81506 Da PI: 7.6511

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Do001886.1	genome	Dichan	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	124.4	4.7e-39	110	186	2	78
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 Cqv+gC+adl+ a++yh+rhkvCe+h+k++vv ++++e+rfCqqCsrfh l+efDe+k+sCr+rLakhn rrrk q+ Do001886.1 110 CQVDGCHADLTGARDYHKRHKVCEAHTKTSVVRIKNIEHRFCQQCSRFHLLQEFDEGKKSCRSRLAKHNGRRRKGQP 186 **************************************************************************876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	9.6E-33	102	171	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	30.863	107	184	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	4.19E-36	108	187	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	1.6E-29	110	183	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF48403	1.55E-7	459	609	IPR020683	Ankyrin repeat-containing domain
Gene3D	G3DSA:1.25.40.20	1.1E-5	462	609	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	1.71E-5	500	608	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 729 aa Download sequence Send to blast
MSVGHKNKSL EWDLNDWRWD ANLFLATPAA AAPSECSSRE LSRAQGEIDF GVVVDKRRRL 60 SPEEDGSAGC SNNSAVANGD NNHVVSVQTR QSSEEERPRK GASSSTPPSC QVDGCHADLT 120 GARDYHKRHK VCEAHTKTSV VRIKNIEHRF CQQCSRFHLL QEFDEGKKSC RSRLAKHNGR 180 RRKGQPQGAV DGNPTNENQS LSSTLFLLLK QLSGLESGSS SEQINHPNYL VNLLKNLAAI 240 ANTPAYQDIL KNAISNPTSN AGNNAANGST MHERNIRSIP VGSESLAEGP PVKKRVQDFD 300 LNDACIEEVE SRTDKIVFKL FGKEPKDFPV DLREQILNWL SHCPTDMESY IRPGCVILTV 360 YLRLPNWMWD EVEDYDQSSL SVPFVVTDKD VCSEIRMLEH ELNLNSFDET SERMDGMMAS 420 RSRALHFLQE IGWLLQRSHM QATSKQQQYC IEGFSVERFR WLLSFAINQE WCAVVKKLLN 480 AMFQGDIDLD VPSPVEFAQG EDLLLTAVNK RSKPLVQFLL RYTTTNYAPG XGVIDPVQFL 540 FTPDMTGPSN ITPLHIAATI SGATGVLDAL TDDPQQLGIK AWKNARDDTG LTPEDYAQKR 600 GHTSYIQMVQ NKIDRRLPKA HVSVAIPSRL SASDTIGKHA SQMKSTGQTT FDVERSQRNQ 660 PLSCRQCVHR VNQLAYHPRT NKFLSTRPAM LSLVAIAAVC VCVGLIMKSP PQVGFMKPFL 720 WEKILWGPT

Sequence ? help Back to Top

Protein Sequence Length: 729 aa Download sequence Send to blast

MSVGHKNKSL EWDLNDWRWD ANLFLATPAA AAPSECSSRE LSRAQGEIDF GVVVDKRRRL  60
SPEEDGSAGC SNNSAVANGD NNHVVSVQTR QSSEEERPRK GASSSTPPSC QVDGCHADLT  120
GARDYHKRHK VCEAHTKTSV VRIKNIEHRF CQQCSRFHLL QEFDEGKKSC RSRLAKHNGR  180
RRKGQPQGAV DGNPTNENQS LSSTLFLLLK QLSGLESGSS SEQINHPNYL VNLLKNLAAI  240
ANTPAYQDIL KNAISNPTSN AGNNAANGST MHERNIRSIP VGSESLAEGP PVKKRVQDFD  300
LNDACIEEVE SRTDKIVFKL FGKEPKDFPV DLREQILNWL SHCPTDMESY IRPGCVILTV  360
YLRLPNWMWD EVEDYDQSSL SVPFVVTDKD VCSEIRMLEH ELNLNSFDET SERMDGMMAS  420
RSRALHFLQE IGWLLQRSHM QATSKQQQYC IEGFSVERFR WLLSFAINQE WCAVVKKLLN  480
AMFQGDIDLD VPSPVEFAQG EDLLLTAVNK RSKPLVQFLL RYTTTNYAPG XGVIDPVQFL  540
FTPDMTGPSN ITPLHIAATI SGATGVLDAL TDDPQQLGIK AWKNARDDTG LTPEDYAQKR  600
GHTSYIQMVQ NKIDRRLPKA HVSVAIPSRL SASDTIGKHA SQMKSTGQTT FDVERSQRNQ  660
PLSCRQCVHR VNQLAYHPRT NKFLSTRPAM LSLVAIAAVC VCVGLIMKSP PQVGFMKPFL  720
WEKILWGPT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	4e-26	102	183	3	84	squamosa promoter binding protein-like 4
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	55	59	KRRRL

Functional Description ? help Back to Top
Source	Description
UniProt	Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Do001886.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025819590.1	0.0	squamosa promoter-binding-like protein 1 isoform X1
Refseq	XP_025819591.1	0.0	squamosa promoter-binding-like protein 1 isoform X1
Swissprot	Q9LGU7	1e-161	SPL1_ORYSJ; Squamosa promoter-binding-like protein 1
TrEMBL	A0A1E5VKN4	0.0	A0A1E5VKN4_9POAL; Squamosa promoter-binding-like protein 1
STRING	Sb03g011920.1	0.0	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1998	38	92

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G60030.1	2e-74	squamosa promoter-binding protein-like 12

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Zhang H,Zhai J,Mo J,Li D,Song F Overexpression of rice sphingosine-1-phoshpate lyase gene OsSPL1 in transgenic tobacco reduces salt and oxidative stress tolerance. J Integr Plant Biol, 2012. 54(9): p. 652-62 [PMID:22889013] Zhang H, et al. Molecular characterization of rice sphingosine-1-phosphate lyase gene OsSPL1 and functional analysis of its role in disease resistance response. Plant Cell Rep., 2014. 33(10): p. 1745-56 [PMID:25113543]