PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.9G022800.1.p
Common NameLOC101759855, SETIT_034095mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family SBP
Protein Properties Length: 969aa    MW: 105552 Da    PI: 5.6603
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.9G022800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP131.13.8e-41151227278
                         -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
                 SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                         CqvegC adl+ ak+yhrrhkvCe+h+ka++++v ++ qrfCqqCsrfh l+efDe+krsCrrrLa+hn+rrrk+++
  Seita.9G022800.1.p 151 CQVEGCGADLTAAKDYHRRHKVCEMHAKASTAVVGNTVQRFCQQCSRFHLLQEFDEGKRSCRRRLAGHNRRRRKTRP 227
                         **************************************************************************875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.102.9E-34143212IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.633148225IPR004333Transcription factor, SBP-box
SuperFamilySSF1036126.02E-39149229IPR004333Transcription factor, SBP-box
PfamPF031104.6E-30151224IPR004333Transcription factor, SBP-box
Gene3DG3DSA:1.25.40.205.3E-8689701IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484031.71E-8722855IPR020683Ankyrin repeat-containing domain
CDDcd002043.27E-9725855No hitNo description
SMARTSM002480.59750779IPR002110Ankyrin repeat
PROSITE profilePS502979.198750817IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.205.3E-8755854IPR020683Ankyrin repeat-containing domain
SMARTSM00248640796826IPR002110Ankyrin repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 969 aa     Download sequence    Send to blast
MEAARLGAQS SHLYGGGLGE LDLNRRESRV FGWDLNDWSW DSEGFVATPV PTAAAHGSGL  60
NSSPSSSEEA EAEVARNGLG GDSDKRKRVV VIDDDDREDQ DAIVNGGGSL SLRIGGNAVG  120
AGAMEGGDVN EDERNGKKIR VQGGSSSGPS CQVEGCGADL TAAKDYHRRH KVCEMHAKAS  180
TAVVGNTVQR FCQQCSRFHL LQEFDEGKRS CRRRLAGHNR RRRKTRPDIT IGGAASIEDK  240
VSNYLLLSLI GICANLNSDS VQHSNSQELL STLLKNLGSV AKSLEPKELC KLLEAYQSLQ  300
NGSNAGTSGT ANAAEEAAGP SNSQLPFVNG SHRGQASSSA VPVQSKATIV VTPEPTSCKL  360
KDFDLNDTCH DTEGFEDGQE GSPPPPFKAA DSPNCASWMQ QDSNQSPPQT SGNSDSTSTQ  420
SLSSSNGDAQ CRTDKIVFKL FNKVPSDLPP VLRSQILGWL SSSPTDIESY IRPGCIILTV  480
YLRLVESAWR ELSDNMSLHL DKLLNSSTGD FWASGLVFVM VRRQLAFMHN GQIMLDRPLA  540
SSSHHYCKIL RVRPVAAPYS ATINFRVEGF NLLSNSSRLI CSFEGRSIFQ EDTGTVADDV  600
NYEDSDIECL SFCCSIPGPR GRGFMEVEDS GFSNGFFPFI IAEKDVCSEV SELESIFESS  660
SNKNADANDI ARDQALEFLN ELGWLLHRAN IMSKQDEMDT PLATFNMWRF RNLGIFAMER  720
EWCAVVKMLL DFLFIGLIDV GSRSPEEVVL SENLLHAAVR RKSVQMIRFL LRYKPNKNLK  780
GTAQTYLFRP DAPGPSTITP LHVAAATNDA EDVLDVLTDD PGLVGISAWS NARDETGFTP  840
EDYARQRGND AYLNLVQRKI DKHLGKGHVV LGVPSSMCSV ITDGVKPGDV SLEICRPMSA  900
SVPGCLLCTQ QARVYPNSRA RTFLYRPAML TVMGVAVVCV CVGILLHTFP RVYAAPTFRW  960
ELLERGPM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A4e-31144224484squamosa promoter binding protein-like 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00633PBMTransfer from PK06791.1Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.9G022800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0388520.0BT038852.1 Zea mays full-length cDNA clone ZM_BFb0336G12 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004981153.10.0squamosa promoter-binding-like protein 6
SwissprotQ75LH60.0SPL6_ORYSJ; Squamosa promoter-binding-like protein 6
TrEMBLK4A5E10.0K4A5E1_SETIT; Uncharacterized protein
STRINGSi034095m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19983892
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47070.10.0squamosa promoter binding protein-like 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]