PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc01720.1.g00010.1.sm.mkhc
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family SBP
Protein Properties Length: 890aa    MW: 97091.6 Da    PI: 5.8708
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc01720.1.g00010.1.sm.mkhcgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP130.75.1e-41153230178
                                     --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
                             SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                                     +CqvegC adl+ ak+yhrrhkvCe+h+ka++++v ++ qrfCqqCsrfh l+efDe+krsCrrrLa+hn+rrrk+q+
  Zpz_sc01720.1.g00010.1.sm.mkhc 153 ACQVEGCVADLTAAKDYHRRHKVCEMHAKASTAVVGKTVQRFCQQCSRFHLLEEFDEGKRSCRRRLAGHNRRRRKTQP 230
                                     5**************************************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.104.1E-33148215IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.223151228IPR004333Transcription factor, SBP-box
SuperFamilySSF1036125.76E-38152232IPR004333Transcription factor, SBP-box
PfamPF031102.6E-29154227IPR004333Transcription factor, SBP-box
SuperFamilySSF484033.11E-8668775IPR020683Ankyrin repeat-containing domain
PROSITE profilePS502979.649670737IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.205.3E-8671773IPR020683Ankyrin repeat-containing domain
CDDcd002044.49E-9675775No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 890 aa     Download sequence    Send to blast
MEAARLGAQS SQLYGGGLGE LDLNMREKRV FSWDLNDWSW DSEHFVATPV PASVTNGLEL  60
NSSPSSSEKA EAEVARNGAM RGDSDKRKRV VVIDECEAED QDLIENSGGG GALSLKIGSD  120
AVSPRTLESS GVNEEVRNGK KIKAQGGISS GPACQVEGCV ADLTAAKDYH RRHKVCEMHA  180
KASTAVVGKT VQRFCQQCSR FHLLEEFDEG KRSCRRRLAG HNRRRRKTQP DISFGGAASI  240
EDKELLSNLL KNLGSVAKSL ELKELSKLLE ACQSLQNGSN AGTSGTANAL ANNSAAEAAG  300
PSNSNLLFMN GSQCGQASSS AIPVQQKATM VANPEPRACK IKDFDLNDTC DYIEGFQNGQ  360
EGSPTPAFKA ADSPNCPSWM HQNSTQIPPQ TSGNSDSTST QSLSSSNGDA QLSDNLSSHL  420
EKLLNSSSDN FWASGLVFVM VRHQLAFMYN GQIMLDKRLA PSSFHYCKIL SVRPVAVPYS  480
AAVNFRIEGF NLVSASSRLI CSFEGCCIFQ EDTAAITDDA ELDDRETECL SFCCPAPGSR  540
GRGFIEVEDS GFSNSFFPFI IAEQDVCSEL SELESIFESF SHQPADVDDV ARNQALEFLN  600
ELGWLLHRAN IISKQEKMEP PLATFNLWRF RNLGIFAMER EWCAVIKMLL DFLFTGLVDV  660
GSQSPEEVVL SENLLHTAVQ RKSVQMVRFL LRYKANKSSK GTTQKNLFRP DDIGPSAITP  720
LHIAASTSDA EDVLDALTDD PGLVGISAWK NARDNTGFTP EDYARQRCND AYLNLVQKKI  780
DKHISEGHVV VGVPSSMCPV ITDFVKPGKV SLEIGRSVSM AAPVAKCHLC RNQALKYQSA  840
AVRTFLYRPA MLTMMGVAVV CVCVGILLHT MPRVYAAPTF RWELLERGAM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A5e-30147227484squamosa promoter binding protein-like 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00603PBMTransfer from AT2G47070Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc01720.1.g00010.1.sm.mkhc
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004981153.10.0squamosa promoter-binding-like protein 6
SwissprotQ75LH60.0SPL6_ORYSJ; Squamosa promoter-binding-like protein 6
TrEMBLA0A0A9REY00.0A0A0A9REY0_ARUDO; Uncharacterized protein
STRINGSi034095m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19983892
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47070.11e-105squamosa promoter binding protein-like 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]